Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C08f
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   1.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   1.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.5  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    24   7.5  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 320 GYRAPPRARSLFAWLLLARPLFARPVFVVHL 228
           G   P   R ++A  LLA P+   PVF+V +
Sbjct: 703 GQIIPTARRVVYASTLLASPIIQEPVFLVEI 733


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 320 GYRAPPRARSLFAWLLLARPLFARPVFVVHL 228
           G   P   R ++A  LLA P+   PVF+V +
Sbjct: 703 GQIIPTARRVVYASTLLASPIIQEPVFLVEI 733


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 163 WYICRQTVFLEVFNCSVSFCYFRF 92
           W I  +  F  V+ C + +C F F
Sbjct: 721 WEIRHRGAFTSVYPCFIEYCSFLF 744


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 265 GHCSRGLCSWYICRLSALP 209
           G C  G C WY+  L+  P
Sbjct: 369 GDCPEGYCIWYLKTLNDSP 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,224
Number of Sequences: 5004
Number of extensions: 17224
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)