Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323C08f
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 31 0.24
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 27 2.9
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 2.9
12_01_0680 + 5797152-5797481,5797816-5798331,5798868-5798944,580... 27 3.9
07_03_1515 - 27348999-27349559,27349738-27350070,27350461-273505... 27 3.9
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 27 5.1
02_01_0646 + 4824243-4825139,4825220-4825852 27 5.1
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 26 6.7
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 26 8.9
04_01_0457 + 5920047-5920433 26 8.9
01_06_0251 - 27885236-27885775,27887383-27887529 26 8.9
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 339 THYRANWVPGPPSSPVFVRLAF 274
THY A+ V PP++ VFV LAF
Sbjct: 589 THYHAHLVDNPPTARVFVTLAF 610
>01_06_0917 +
32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 209 RKST*SADVPRTQAARTMAGLTKARRTKTGLEGGPG 316
+K+ AD P+T + G ++R L+GGPG
Sbjct: 873 KKAIAEADAPKTYRITDIFGFKRSRPLYRSLKGGPG 908
>01_06_0916 + 32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 209 RKST*SADVPRTQAARTMAGLTKARRTKTGLEGGPG 316
+K+ AD P+T + G ++R L+GGPG
Sbjct: 1407 KKAIAEADTPKTYRITDIFGFKRSRPLYRSLKGGPG 1442
>12_01_0680 +
5797152-5797481,5797816-5798331,5798868-5798944,
5800706-5800778,5801689-5801786,5801868-5801964,
5802451-5802516,5802717-5802764,5803223-5803297,
5803913-5803970,5804553-5804611,5805098-5805160,
5805161-5805205,5805490-5805588,5805713-5805760,
5805884-5805931,5806008-5806064
Length = 618
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 336 HYRANWVPGPPSSPVFVRLAF 274
HY A+ V PP++ VFV L F
Sbjct: 259 HYHAHLVDNPPTARVFVTLEF 279
>07_03_1515 -
27348999-27349559,27349738-27350070,27350461-27350574,
27350911-27351141,27351231-27351686
Length = 564
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 336 HYRANWVPGPPSSPVFVRLAF 274
HY A+ V PP++ VFV L F
Sbjct: 527 HYHAHLVDNPPTARVFVTLEF 547
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 327 ANWVPGPPSSPVFVRLAFVSP 265
A P PPSSP ++R A +SP
Sbjct: 901 AGLAPSPPSSPTWLREAALSP 921
>02_01_0646 + 4824243-4825139,4825220-4825852
Length = 509
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 79 LCPVVIVPHRHLCSIEPLRSEKLG 8
+C V ++ HR + S P+R+++LG
Sbjct: 136 ICTVELLSHRRVHSFRPVRADELG 159
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 MRHDYYRTKKKHNKTEITKRNRTIKHFQENSL-SADVP 163
M HD YRT KK K E +R I L S DVP
Sbjct: 761 MDHDEYRTSKKIKKEERRQRQSGIDSNPGYDLASGDVP 798
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 253 ANNGRANKSQANKDRARGGAR 315
A NGR N+S ++K+ A+G ++
Sbjct: 397 ATNGRTNQSMSSKNAAKGSSK 417
>04_01_0457 + 5920047-5920433
Length = 128
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 254 RTMAGLTKARRTKTGLEGGPG 316
+TMA + RRT+T EGG G
Sbjct: 73 KTMARTLRLRRTRTSSEGGVG 93
>01_06_0251 - 27885236-27885775,27887383-27887529
Length = 228
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 210 GRALSRQMYHEHRPREQWPG*QKPGEQRPGSRGGPVPNSP 329
GRA SR H HR G P Q P R P
Sbjct: 188 GRAASRGCRHPHRREAHGGGGTSPHRQGPAGRRAAASRRP 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,655
Number of Sequences: 37544
Number of extensions: 138978
Number of successful extensions: 429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -