Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323C08f
(342 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical pr... 28 2.0
AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GA... 27 2.7
AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GA... 27 2.7
AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion def... 27 2.7
AF047658-3|ABC71828.1| 315|Caenorhabditis elegans Hypothetical ... 27 2.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 26 6.1
U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulat... 26 6.1
Z93372-2|CAB07547.2| 505|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 26 8.1
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 26 8.1
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 26 8.1
>Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical
protein F14F8.12 protein.
Length = 329
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 133 EVFNCSV-SFCYFRFVVFFLCPVVIVP 56
++F C + SF +F FV+ L P + +P
Sbjct: 154 DIFECFIISFVFFNFVISVLTPFIYIP 180
>AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GABA
receptor EXP-1A protein.
Length = 533
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 103 YFRFVVFFLCPVVIVPHRHLCSIEPLRSEKL 11
+F FV+F L +I P+ H+ S++P + L
Sbjct: 495 FFGFVIFCLFYFLIYPNLHIVSVDPACDKNL 525
>AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GABA
receptor EXP-1B protein.
Length = 539
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 103 YFRFVVFFLCPVVIVPHRHLCSIEPLRSEKL 11
+F FV+F L +I P+ H+ S++P + L
Sbjct: 501 FFGFVIFCLFYFLIYPNLHIVSVDPACDKNL 531
>AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion
defective (defecation)protein 1 protein.
Length = 539
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 103 YFRFVVFFLCPVVIVPHRHLCSIEPLRSEKL 11
+F FV+F L +I P+ H+ S++P + L
Sbjct: 501 FFGFVIFCLFYFLIYPNLHIVSVDPACDKNL 531
>AF047658-3|ABC71828.1| 315|Caenorhabditis elegans Hypothetical
protein K03H6.4 protein.
Length = 315
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 163 WYICRQTVFLEVFNCSVSFCYFRFVVFFLCPVVI 62
WY RQT+ V+ CSV C+ V F +++
Sbjct: 119 WYH-RQTIKYSVYLCSVFLCFCAIVAFLNYNIIV 151
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 249 PREQWPG*QKPGEQRPGSRGGPVPNSPY 332
P +PG PG RP + P P +PY
Sbjct: 729 PYPGYPGYGPPGAMRPPAGFAPPPGAPY 756
>U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulated
protein 191 protein.
Length = 97
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 121 CSVSFCYFRFVVFFL 77
CS FCYF FV+ F+
Sbjct: 50 CSFFFCYFCFVILFV 64
>Z93372-2|CAB07547.2| 505|Caenorhabditis elegans Hypothetical
protein BE10.2 protein.
Length = 505
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 339 THYRANWVPGPPSSPVFVRLAFVSPA 262
T + W PG P +P F ++ V+PA
Sbjct: 322 TVFPPGWFPGVPVTPFFHWMSMVNPA 347
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 241 NTGRANNGRANKSQANKDRARGGARY 318
N GR+ + R ++S N D RGG Y
Sbjct: 97 NNGRSADNRYSQSNYNYDSNRGGQHY 122
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 264 PG*Q-KPGEQRPGSRGGPVPNSPY 332
PG Q PG Q PG P PN P+
Sbjct: 174 PGGQITPGSQAPGGGPTPAPNVPF 197
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 264 PG*Q-KPGEQRPGSRGGPVPNSPY 332
PG Q PG Q PG P PN P+
Sbjct: 171 PGGQITPGSQAPGGGPTPAPNVPF 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,984,901
Number of Sequences: 27780
Number of extensions: 115838
Number of successful extensions: 388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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