Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323C07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.005
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.060
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 28 0.97
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 27 1.3
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 1.7
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 27 2.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 5.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 6.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 6.8
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 9.0
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 25 9.0
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 9.0
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 35.5 bits (78), Expect = 0.005
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 258 IHTISTPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAKP 437
IH + + +G V+ I + + A+V +ES+ SA A++ALH ++ +++ AKP
Sbjct: 16 IHALFSAYGNVKDIWMLSPDN-SAIVSYESLSSAIVARDALHNRPVFENHGPVQVMLAKP 74
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.9 bits (69), Expect = 0.060
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 132 ERSNGNNY-MAGEPCRKRKLPARPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVF 308
E +N N++ G+ + P H L + N ++ + T + +G V I +
Sbjct: 562 ESNNTNSWPTVGDATIENLTQHEPTHALW--VGNLPSGVSATTVATTFSAYGTVSSIRML 619
Query: 309 KKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAK 434
A + F+SVE+A E L+G I+ G + I FAK
Sbjct: 620 SHKH-SAFLNFDSVETAKHVLEELNGKRIFFGSDPVCISFAK 660
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +3
Query: 240 PITVDVIHTISTPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHG 386
P++ + +++I +G+++ + + + A + F S+ SAT A +HG
Sbjct: 173 PLSQERLYSIFRTYGKLRSVTI--NSPTSATLSFSSLRSATSALNCMHG 219
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 420 IEFAKPEKLNVFKNDQ-ESWDYTL 488
+EFA PE+ + KND ES+D+ +
Sbjct: 619 LEFANPEETKILKNDSVESYDWLI 642
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = -2
Query: 364 LVADSTLSNSTIACTPFFLKTTILCTCPCGVLIVCITSTVMGYAGLMMV*SSMWFGRAGS 185
+V D T + I C F L TT+ P +V ++ + ++ + + + W G
Sbjct: 159 IVVDGTPEKNVITCMKFGLSTTLYYFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDP 218
Query: 184 FR 179
F+
Sbjct: 219 FK 220
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 336 EFESVESATRAKEALHGCDIY 398
+F + E++ R K+++ GCD+Y
Sbjct: 34 KFSNGETSVRIKQSVRGCDVY 54
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 5.2
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Frame = +3
Query: 189 PARPNHILLYTIINPA--------YPITVDVIHTISTPHGQVQRIVVFKKNGVQAMVEFE 344
P R LL + NPA + DV +G+V I V Q V+FE
Sbjct: 503 PIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFE 562
Query: 345 SVESATRAKEALH 383
+ + A +A LH
Sbjct: 563 NADFAEKAITGLH 575
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 339 FESVESATRAKEALHGCDIYSGCCTLKIE-FAKPEKLNV 452
F S ++A A++ L D+YS C + ++ + K + N+
Sbjct: 157 FSSRDAAASARDTLLSSDVYSACSMIILDNYRKGSQTNL 195
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 216 YTIINPAYPITVDVIHTISTPHGQVQRIVVFKK 314
YT ++PA + V V+H + T +V+ +FK+
Sbjct: 1776 YTCVSPADYLEVMVLHRMRTVEDRVRTCELFKE 1808
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 327 AMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAK 434
A VE+E A A +HG + G L++E+AK
Sbjct: 50 AFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 76 WLTTVVVKKDYVQVATWMLKGATATTTWPASHAAN 180
W+ + + +YVQV TW G +T P ++AA+
Sbjct: 233 WMQLIKDQPNYVQVLTWNDYG-ESTYIGPTNYAAD 266
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = -2
Query: 493 SDNV*SQLSWSFLNTFNFSGLANSILSVQHPEYMSQP-CSASFALVADSTLSNSTIACTP 317
SD+ S S L+ + + + I V Y+ Q + F S S I P
Sbjct: 71 SDDTMSVSKASLLSN-SLPSVKSKIFKVPRARYVKQSWLTTPFTAFWSLLGSISVIFWNP 129
Query: 316 FFLKTTILCTCPCGVLIVCITSTVMGYAG 230
F + ILC P + +C+ + + G
Sbjct: 130 FGIPDVILCNGPGTCVFICLLGYLAKFLG 158
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 273 TPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAK 434
TP G+ +V + N VEF + K A+ CD+ S + KI+F K
Sbjct: 154 TPDGETS-LVYYCDNETVHGVEFNEPPTNI-PKGAIRVCDVSSNFISRKIDFTK 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,571
Number of Sequences: 5004
Number of extensions: 48475
Number of successful extensions: 212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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