Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323C07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 118 3e-27
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 115 2e-26
Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical pr... 87 5e-18
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 87 5e-18
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 29 2.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF022970-4|AAB69898.1| 336|Caenorhabditis elegans Hypothetical ... 29 2.0
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 27 6.2
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 27 6.2
Z30662-1|CAA83137.1| 344|Caenorhabditis elegans Hypothetical pr... 27 8.1
U12965-8|AAA20606.1| 345|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 118 bits (283), Expect = 3e-27
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Frame = +3
Query: 192 ARPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVFKK-NGVQAMVEFESVESATRA 368
A PN +L+ T++N YPI DVI+ IS G+V R+ V K VQA+VEFES+E A A
Sbjct: 117 ATPNKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAA 176
Query: 369 KEALHGCDIYSGCCTLKIEFAKPEKLNVFKNDQESWDYTLSEDLQPVQ 512
K A++G DIYSGCCTLK+EFAKP+++ V + D++ D+TL ++ +P +
Sbjct: 177 KHAMNGADIYSGCCTLKVEFAKPDRVRVQRQDKDQRDFTLPDNRRPYE 224
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 115 bits (276), Expect = 2e-26
Identities = 53/103 (51%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Frame = +3
Query: 192 ARPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVFKK-NGVQAMVEFESVESATRA 368
A PN +L+ T++N YPI DVI+ IS G+V R+ V K VQA+VEFES+E A A
Sbjct: 117 ATPNKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAA 176
Query: 369 KEALHGCDIYSGCCTLKIEFAKPEKLNVFKNDQESWDYTLSED 497
K A++G DIYSGCCTLK+EFAKP+++ V + D++ D+TL ++
Sbjct: 177 KHAMNGADIYSGCCTLKVEFAKPDRVRVQRQDKDQRDFTLPDN 219
>Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical
protein D2089.4b protein.
Length = 453
Score = 87.4 bits (207), Expect = 5e-18
Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +3
Query: 195 RPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVFKKNGV-QAMVEFESVESATRAK 371
+PN +L I N +P+++DV++ + T +G+V RI+ F KN QA+V+ SA AK
Sbjct: 65 QPNSVLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAK 124
Query: 372 EALHGCDIYSGCCTLKIEFAKPEKLNVFKNDQESWDYT 485
+ L ++Y+GCCTL+I+++K LNV N+ +S DYT
Sbjct: 125 QGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYT 162
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 87.4 bits (207), Expect = 5e-18
Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +3
Query: 195 RPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVFKKNGV-QAMVEFESVESATRAK 371
+PN +L I N +P+++DV++ + T +G+V RI+ F KN QA+V+ SA AK
Sbjct: 227 QPNSVLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAK 286
Query: 372 EALHGCDIYSGCCTLKIEFAKPEKLNVFKNDQESWDYT 485
+ L ++Y+GCCTL+I+++K LNV N+ +S DYT
Sbjct: 287 QGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYT 324
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 173 PQTKAAGAA----EPHTALHHHQSGISHHCGRNTHNKHPARTSAKDRRLQEEWR 322
P +K GAA PH HH S++ + H++ R ++ +R Q +W+
Sbjct: 8 PSSKIDGAAPRSRSPHRRQPHHSRSSSNNISSSLHSRLRRRRRSRSQRKQLQWQ 61
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 EQRQQLHGRRAMPQTKAAGAAEPHTALHHHQSGISHHCGRNTHNKHPA-RTSAKDR 301
++R + G+ P +A + H HHH +H+ RN H H R +DR
Sbjct: 48 DRRHRSPGKHIAP-ARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDR 102
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 EQRQQLHGRRAMPQTKAAGAAEPHTALHHHQSGISHHCGRNTHNKHPA-RTSAKDR 301
++R + G+ P +A + H HHH +H+ RN H H R +DR
Sbjct: 892 DRRHRSPGKHIAP-ARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDR 946
>AF022970-4|AAB69898.1| 336|Caenorhabditis elegans Hypothetical
protein F13A2.3 protein.
Length = 336
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +2
Query: 167 AMP--QTKAAGAAEPHTALHHHQSGISHHCGRNTHNKHPARTSAKDRRLQEEWR 322
AMP Q A +PH HH+ S H P +T + R ++ WR
Sbjct: 200 AMPIKQKSEANGTKPHNNTTHHRQFDSSRRREERHQAAPYQTRSAYGRYRDSWR 253
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 282 GQVQRIVVFKKNGVQAMVEFESVESATRAKEALHGCDI 395
G + + FK G A V+FE+ ESA RA ++ DI
Sbjct: 279 GPINEVRTFKIQGY-AFVKFETKESAARAIVQMNNADI 315
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 137 EQRQQLHGRRAMPQTKAAGAAEPHTALHHH 226
+Q+Q L MP + GAA P T HHH
Sbjct: 577 QQQQTLTNSMYMPIVTSTGAAVPLTNGHHH 606
>Z30662-1|CAA83137.1| 344|Caenorhabditis elegans Hypothetical
protein T16H12.1 protein.
Length = 344
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 198 AAPAAFVCGMARRPCSCCRCSFQHPGRYLHVVFFHHYRCKP 76
A P+ F C + CCRC R++H HH C P
Sbjct: 304 AHPSKFECARQQMNVKCCRCL-----RFVH----HHVACDP 335
>U12965-8|AAA20606.1| 345|Caenorhabditis elegans Hypothetical
protein F23F12.4 protein.
Length = 345
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 487 NV*SQLSWSF-LNTFNFSGLANSILSVQHPEYMSQPCSASFALVADSTLSNSTI 329
NV ++W F NFS L+++H +++ S A TL+NS +
Sbjct: 205 NVAPHVNWGFEYPVSNFSNFCQKFLTIEHAHWVTVHHLKSLRNCASVTLNNSKL 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,326,693
Number of Sequences: 27780
Number of extensions: 293418
Number of successful extensions: 1159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -