Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C05f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069694-1|AAL39839.1|  843|Drosophila melanogaster LD46629p pro...    25   2.7  
AE014298-970|AAO41636.1|  843|Drosophila melanogaster CG33691-PB...    25   2.7  

>AY069694-1|AAL39839.1|  843|Drosophila melanogaster LD46629p
           protein.
          Length = 843

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 159 NGVCGDKGKERKENQSICREQSCQ 230
           NG   D G ++K +   C E+S Q
Sbjct: 127 NGAVSDSGSDKKSSTGPCDEESIQ 150



 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +3

Query: 258 CS*KSIKTEKLCTKSNSGTNYKEKEKVYYANEECDKRRGKFLFNCYPAIIHTPQEKKYY 434
           C    I +   C +S   T+ + +  +   ++ CD   G+ +FN    ++      K+Y
Sbjct: 190 CLHPDIYSSCTCVRSYYITDAEARLFIEINHKHCDGEFGRDIFNQKDLVVRLSDASKFY 248


>AE014298-970|AAO41636.1|  843|Drosophila melanogaster CG33691-PB,
           isoform B protein.
          Length = 843

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 159 NGVCGDKGKERKENQSICREQSCQ 230
           NG   D G ++K +   C E+S Q
Sbjct: 127 NGAVSDSGSDKKSSTGPCDEESIQ 150



 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +3

Query: 258 CS*KSIKTEKLCTKSNSGTNYKEKEKVYYANEECDKRRGKFLFNCYPAIIHTPQEKKYY 434
           C    I +   C +S   T+ + +  +   ++ CD   G+ +FN    ++      K+Y
Sbjct: 190 CLHPDIYSSCTCVRSYYITDAEARLFIEINHKHCDGEFGRDIFNQKDLVVRLSDASKFY 248


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,608,772
Number of Sequences: 53049
Number of extensions: 363679
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)