Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.56 
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   2.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.9  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   9.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.0  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 21  QSQPHLPAVHPADQRTRLWQPSPSPSVLSYP 113
           QS    P + P    T  + PSPSP+  SYP
Sbjct: 307 QSSASHPVLQPPAPSTLQFNPSPSPAAPSYP 337


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 15  EGQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCA 176
           EG +QP  P    A  +  +W    +  +   P  TI++   +++  +  T+C+
Sbjct: 23  EGSTQPK-PDPSGATMKACVWDGPLNVKIAEVPKPTITHPKDVIVKTTACTICS 75


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 54  ADQRTRLWQPSPSPSVLSYPNSTISYTS 137
           A Q +RL  P P PS  S P  TIS  S
Sbjct: 173 AKQLSRLPTPLPPPSSSSLPTGTISTNS 200


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 160 KRQYAPNDTQYIVVSGPSYIAATYGWLRLTKYTK 261
           K++  P    + +VS P+Y   + GWL     TK
Sbjct: 217 KKRVIPTGYGFNLVSFPNYFFESLGWLFFALLTK 250


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 298 RTHW*NLRSGISPEHESENVN 360
           R HW N + G+ PE+ +++ N
Sbjct: 13  RHHWSNSKDGMPPEYTNQDPN 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,645
Number of Sequences: 5004
Number of extensions: 43191
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)