Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   4.0  
02_05_0584 - 30135768-30135790,30136104-30136866                       28   4.0  
04_03_0118 - 11474060-11475298                                         28   5.2  
12_01_0910 + 8858443-8859414                                           27   9.1  
09_03_0119 - 12497422-12497889                                         27   9.1  
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109...    27   9.1  

>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 60  QRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCAE*YSI 191
           +R R+  PSPSPS    P+ + S T+      S  T  +  YSI
Sbjct: 522 ERKRVRAPSPSPSPSPSPSPSASATTPTQTGTSTTTTTSSMYSI 565


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 20  PKPTSPARGAPCRPTNEALATFPFPFCSLLP 112
           P P SPA GAP  P++ + + FPFP  S LP
Sbjct: 104 PAPGSPAAGAP--PSSGS-SGFPFPMPSPLP 131


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 27  QPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILL 149
           QPH P  H        W+ S +P V  YP   +   + + L
Sbjct: 109 QPHPPWGHSMKDEELFWRASMAPRVEEYPYQRVPKVAFLFL 149


>12_01_0910 + 8858443-8859414
          Length = 323

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 30  PHLPAVHPADQRTRLWQPSPSPSVLSYPN 116
           P LP   P       W+P PSP+VL +P+
Sbjct: 7   PSLPPASPLPLPP--WRPDPSPAVLPWPD 33


>09_03_0119 - 12497422-12497889
          Length = 155

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 3   RIRHEGQSQPHLPAVHPADQRTRLWQPSPS 92
           R R + +S PH P + PAD  +    P P+
Sbjct: 75  RERRQIRSSPHFPILFPADSGSSTTSPPPA 104


>02_05_0973 +
           33209385-33209456,33210517-33210721,33210810-33210975,
           33211268-33211490,33211928-33212004,33212090-33212183,
           33212202-33212271,33212350-33212447,33212565-33212692,
           33212772-33212900,33213013-33213421,33213984-33214105,
           33214224-33214313,33215092-33215304,33215453-33215584,
           33216258-33216333,33216403-33216420
          Length = 773

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 238 LRLTKYTKILLS*SSNYDCIRTHW*NLRSGISPEHESENVNIKN 369
           LRLT++    L+ S+  D    HW +L SG+ P    EN N  N
Sbjct: 395 LRLTEFFYCQLAPSTGSDTAH-HWPSLLSGLDPFLCEENSNSDN 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,084
Number of Sequences: 37544
Number of extensions: 276842
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)