Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...   138   5e-34
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      32   0.060
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    30   0.24 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   1.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   5.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.8  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   9.0  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   9.0  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score =  138 bits (334), Expect = 5e-34
 Identities = 73/145 (50%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
 Frame = +1

Query: 91  MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQW 270
           M  IKL SSDNE FVVD  IA+ S+ IK                PLPNV+S +L+KV++W
Sbjct: 1   MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57

Query: 271 ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 444
             +HK+D      E+ + + K++ DI  WD  F+ VDQ  LFE++LA+NYLDIK LLD  
Sbjct: 58  CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTG 117

Query: 445 CKTVANMIKGKTPEEIRXTXXIKND 519
           CKTVANMI+GK+PE+IR T  I ND
Sbjct: 118 CKTVANMIRGKSPEDIRKTFNIPND 142


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 100 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 279
           ++L S D  VF+++ EIA  S TI+                  P++ + +L+KV ++  Y
Sbjct: 6   VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65

Query: 280 ---HKDDPPLPEDD 312
              +K+   +P+ D
Sbjct: 66  NYRYKNQLDIPKFD 79


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 295 PLPEDDENKEKRTDDISSWDADFLKVDQGT 384
           P+P  D NK   T D+SSW+ D+  +  G+
Sbjct: 9   PIPRSDSNK---TSDVSSWEEDYELISLGS 35


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 295 PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 459
           P  +DD N +  +DD S+ D    ++D   L E +L   N    + L D+T  T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  LKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKS 151
           LKI      V + ILEK   ++  C+H+   S  L L S
Sbjct: 209 LKIENNSRSVKLSILEKALKEVKGCDHEILVSYYLQLGS 247


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 29  FVLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKSPNA 160
           F LK   ++L+ + ++L K+       N+Q+T + + + KSPNA
Sbjct: 32  FKLKSPSYYLLNSFKLLVKSEG-----NNQSTTADVTLTKSPNA 70


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 253 KKVIQWATYHKDDPPLPEDDENKEKR 330
           K+ IQ     K +PP PE+ E KE +
Sbjct: 92  KETIQPPEEVKTEPPQPEEKEGKEAK 117


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 226 LPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA 405
           + +V S  L  +    T+ +    L E  EN+ +    +S+W     +V       LILA
Sbjct: 15  IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAMCVVLILA 74

Query: 406 A 408
           A
Sbjct: 75  A 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,872
Number of Sequences: 5004
Number of extensions: 36439
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)