Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323C02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   3.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 334 DDISSWDADF 363
           DDIS WD DF
Sbjct: 669 DDISGWDNDF 678


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 376 GQLSKNQHPMMICHQSSFPC 317
           GQ+S    P++ CH +   C
Sbjct: 351 GQISNGYTPVLDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 376 GQLSKNQHPMMICHQSSFPC 317
           GQ+S    P++ CH +   C
Sbjct: 62  GQISNGYTPVLDCHTAHIAC 81


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 376 GQLSKNQHPMMICHQSSFPC 317
           GQ+S    P++ CH +   C
Sbjct: 351 GQISNGYTPVLDCHTAHIAC 370


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 NSAILKKVIQWATYHKDD 291
           NS    K+I+W T+ + D
Sbjct: 378 NSGATDKIIRWCTWSEGD 395


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 NSAILKKVIQWATYHKDD 291
           NS    K+I+W T+ + D
Sbjct: 378 NSGATDKIIRWCTWSEGD 395


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 NSAILKKVIQWATYHKDD 291
           NS    K+I+W T+ + D
Sbjct: 378 NSGATDKIIRWCTWSEGD 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,291
Number of Sequences: 438
Number of extensions: 2755
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)