Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 29 0.32
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 3.0
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 3.0
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 25 5.2
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 5.2
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 5.2
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 6.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.0
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 29.5 bits (63), Expect = 0.32
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Frame = +1
Query: 85 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 264
GK + +++ + P L + DRI+A D + + + K + + + F++LK ++T
Sbjct: 18 GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLK-PHVQT 76
Query: 265 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK 369
+ + + + L KK +++PIE + R TGS K
Sbjct: 77 HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWK 125
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 138 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 49
+ P+L+ N+ L L++NEK+ F++ N
Sbjct: 49 RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Frame = -3
Query: 447 VVCVILKERLLFWRSEPEAFWYTRIPF*ERASCKAAGNPFNGDHLTFFG*ERSF------ 286
V+C + + P+ FW PF +R K NG+ LT F
Sbjct: 60 VLCSRDADEFAMRKGYPKGFWELLYPFGDRIRGKVNRRGMNGEMLTLENLNLHFVPIDAL 119
Query: 285 RGNLNEGSFDSCR 247
+L+E SF S R
Sbjct: 120 ESHLSEASFPSLR 132
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 214 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 390
QTN ++ + + K KIA T L K+ + P+ ++ +L +++ VPE
Sbjct: 29 QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPE 87
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 363 ERASCKAAGNPFNGDHLTF 307
+R + K GN F GDH F
Sbjct: 21 KRRASKVVGNSFGGDHFNF 39
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 214 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 390
QTN ++ + + K KIA T L K+ + P+ ++ +L +++ VPE
Sbjct: 29 QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPE 87
>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 178 AHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKK 309
A+DL+ AI N+T V E + A SE+ +SKK
Sbjct: 18 AYDLDSSTAIENETKLSVKEKVAKEIANIALRSGGSESNGISKK 61
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 162 RRWCQSPRFGGKGGYFQSDKCKSVRNLKVCRNQNC 266
RR+C GGKG Y D +R+ + R+ +C
Sbjct: 1158 RRFCLRENSGGKGEYHGGDGV--IRHFEFRRSMHC 1190
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 374 FLFKNEPVARRRVTHSMGIISHFLDKNAVSEAILTKAVLIPADFKISNTF 225
F KNE ++ + S G I+H VS + K LIP +F + F
Sbjct: 255 FQVKNE-MSNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPFEFSLEGGF 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,718
Number of Sequences: 5004
Number of extensions: 48690
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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