Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889... 39 0.003
11_08_0083 + 28256844-28258760 32 0.32
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516... 28 4.0
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 5.2
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 28 5.2
01_01_1019 + 8057784-8058983 28 5.2
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 6.9
11_03_0039 - 9145639-9146378,9149199-9149538 27 6.9
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 27 9.1
>09_04_0447 +
17688248-17688319,17688414-17688515,17688852-17688981,
17689198-17689290,17689363-17689451,17689889-17689969,
17690118-17690207,17690653-17690772,17690877-17690927,
17691125-17691171,17691321-17691378,17691451-17691507
Length = 329
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/97 (26%), Positives = 49/97 (50%)
Frame = +1
Query: 70 KLLIEGKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKS 249
+L +GK + V++ + + +L+ DR +A D V A + K + N+T+ F+ +
Sbjct: 18 RLAAKGKVRDVYESGE---HLVLVTTDRQSAFDRVLA-SIPFKGQVLNETSLWWFDRTRH 73
Query: 250 AGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGS 360
A V + ++K+C + P+E+V R TGS
Sbjct: 74 I-TPNAVVSSPDKNVTIAKRCSVFPVEFVVRGYVTGS 109
>11_08_0083 + 28256844-28258760
Length = 638
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 325 IEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDDANHDPQWSEEQII 477
IE RRL S R GVP FR K ET ++D + DP+ EE+++
Sbjct: 413 IEETGRRL---SICARQFGVPFKFRAIAAKWETVRREDLHLDPEEEEEEVL 460
>07_03_1421 -
26451012-26451155,26451256-26451322,26451605-26451657,
26451736-26451806,26453340-26453482,26453858-26453919,
26454008-26454100,26454203-26454314,26454432-26454547,
26454625-26454787,26454829-26455349,26455429-26455528,
26457472-26457552,26457666-26457877
Length = 645
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 67 GKLLIEGKT-KQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEG 195
G L+ G+T K+ +V ++ CL LN R GD VK + G
Sbjct: 349 GTSLVNGETQKKAEEVLEEVLLCLTLNNLRADRGDNVKENSCHG 392
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -3
Query: 222 ICLIGNSRLSLQIVGFDTIACGDSVLVKKQAVPRLVRNIEYLFGLTLNEKFAQFILSNLF 43
+CL GN + + + GF + D+ L + + +++ L LN+ I S
Sbjct: 925 LCLSGNCKTCVNLTGFPESSTSDACLKLHYRTLKYEDQMHHVYQLNLNDVDLHLIPSVFG 984
Query: 42 RMRHF 28
++R F
Sbjct: 985 QIRRF 989
>03_05_0626 + 26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 27.9 bits (59), Expect = 5.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 70 KLLIEGKTKQV---FDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEI 240
KL EGKT + F++ L ++ +++ G A+D AA+ + + ++
Sbjct: 1003 KLRREGKTAEADAEFELAKSLESQLEESESQVSGGKSSDAND----AAVEDLLDPQIMSA 1058
Query: 241 LKSAGIKTAFVKIASETAFLSKKCEMIP 324
LKS G A + S A SKK E P
Sbjct: 1059 LKSIGWSDADLSAQSSNAQPSKKAEAKP 1086
>01_01_1019 + 8057784-8058983
Length = 399
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 209 EIAAFPSKSWALTPSPAVILSLLRSKQY 126
++AA S +W LT A+ ++L R KQY
Sbjct: 100 DVAAVLSLAWCLTHGGALAMALTRRKQY 127
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 171 CQSPRFGGKGGYFQSDKCKSVRNLKVCRNQNCLR*DCL*NC 293
C R GGK YF KC S + + N C+ NC
Sbjct: 124 CGICRVGGKENYFHCAKCGSCYAVALRDNHQCVENSMRQNC 164
>11_03_0039 - 9145639-9146378,9149199-9149538
Length = 359
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 367 KRNPGVPEGF---RFTPPKQETFFKDDANHDPQWSEEQIISAKFN 492
KRNP VP+G+ P ET D + +++ + + AKFN
Sbjct: 202 KRNPPVPQGYYGCGLVLPVAETLVADLCGNPLEYAVQLVRKAKFN 246
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 32 CLILNKLDNINWANFSLRVRPNRYSMFRTNLGTA 133
C IL++ N W NFS + PN YS+ T + TA
Sbjct: 490 CKILSQYVNAVWKNFSEGITPN-YSINMTYVLTA 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,287,812
Number of Sequences: 37544
Number of extensions: 331287
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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