Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B09f
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 231 2e-61
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 228 1e-60
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 220 3e-58
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.35
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.35
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 4.3
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 4.3
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 27 5.7
02_03_0106 + 15292869-15296138 27 5.7
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 27 7.6
04_04_1108 + 30961600-30962013,30963131-30964465 27 7.6
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 231 bits (565), Expect = 2e-61
Identities = 103/134 (76%), Positives = 116/134 (86%)
Frame = +2
Query: 2 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEAL 181
ARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEAL
Sbjct: 6 ARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEAL 65
Query: 182 EAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT 361
EA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT
Sbjct: 66 EAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGT 125
Query: 362 VARVRIGQPIMSXR 403
ARV IGQ ++S R
Sbjct: 126 CARVDIGQVLLSVR 139
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 228 bits (557), Expect = 1e-60
Identities = 101/133 (75%), Positives = 115/133 (86%)
Frame = +2
Query: 5 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALE 184
RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALE
Sbjct: 314 RCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALE 373
Query: 185 AGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTV 364
A RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT
Sbjct: 374 AARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTC 433
Query: 365 ARVRIGQPIMSXR 403
ARVRIGQ ++S R
Sbjct: 434 ARVRIGQVLLSVR 446
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 220 bits (538), Expect = 3e-58
Identities = 98/132 (74%), Positives = 113/132 (85%)
Frame = +2
Query: 8 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 187
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 188 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 367
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 368 RVRIGQPIMSXR 403
RV IGQ ++S R
Sbjct: 124 RVDIGQVLLSVR 135
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.35
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 229
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.1 bits (67), Expect = 0.35
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 390 MGCPMRTRATVP*GLPNAPRXPVWSLSAPAH 298
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 216 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 115
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 128 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 12
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 289 NVIMRWS**APDWXAWCVWQASGYCSTCSHWT 384
NV+ RW P AWC + S + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 255 LMRIWN*SFPQFFTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKI 82
L+ W+ +FP++ LL + R EL CS S C GK+ ++ +P+ +I
Sbjct: 1008 LIIFWSIAFPRWLE--LLIRKRDGLCHFELQCSLSLLRSCLDGGKNWSIVQQIPEVRI 1063
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -1
Query: 159 SYSSDTKCTHSGKSSTVALFLPKSKIRILGSGTPRQNLDFGYG 31
S D + T++ +SS++ + L + ++++ + R+NLDF +G
Sbjct: 230 SKQCDYEITYADRSSSMGI-LARDNMQLITADGERENLDFVFG 271
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 203 CSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 99
C + PP PL++ V + P+A + S + +++S
Sbjct: 103 CGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,464
Number of Sequences: 37544
Number of extensions: 268365
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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