Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    29   0.32 
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    29   0.42 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    28   0.97 
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   3.0  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   5.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   6.8  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    25   6.8  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   9.0  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   9.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.0  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +2

Query: 14  EKWLAYENLKEDILEKIRKLEEERHTVDLWSSAPE-----WGKRRRK 139
           EKW++   + +++  K R L++ERH ++  +   E      GKRRRK
Sbjct: 358 EKWISQIRISKNLEVKQRLLDQERHALETLAKNIENNRFILGKRRRK 404


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
 Frame = +2

Query: 248 YRNSSSSKF-KISLI------GKPVLMSNHVYIEISKIYFQFSSK 361
           Y+ S  S + KISL+       K  L+S+H++ EI K+YF  SS+
Sbjct: 294 YKTSKPSPYAKISLLHFLLTESKHFLISDHIFSEIQKVYFLPSSQ 338


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 14  EKWLAYENLKEDILEKIRKLEEERHTVDLWSSAPEWGKRRRKRQ 145
           +K++  +  KE++   I KL EER    L SS+   GK+   ++
Sbjct: 93  DKYIENKLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKE 136


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 212 LVRKLLERAE*CYRNSSSSKFKISLIGKPVLMSNHVYIEISKIYFQFSSKTTRTSLKDIF 391
           LV   L + +   R S+SS   ++ + KP+      Y  + KIY  +     +T L DI 
Sbjct: 71  LVGSSLTQLKEIIRTSTSS---MTAVPKPLKFLRPHYFTLVKIYDSWPQSPQKTQLADIL 127

Query: 392 SMI 400
           S++
Sbjct: 128 SVL 130


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 299 VLMSNHVYIEISKIYFQFSSKTTRTSLKDIFSMINS 406
           V+ S+HV I++ ++Y + +SK     ++ + S+  S
Sbjct: 314 VVFSSHVSIDVPRVYSRCNSKPVSLKIQQLKSLYPS 349


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   FKSEKWLAYENLKEDILEKIRKLEEERHTVDL 100
           FKS K LAY  L   +     KL EE+  +++
Sbjct: 613 FKSSKNLAYSQLDSSLTTNPSKLLEEKELLEM 644


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 353 KTENKFWKFLYTHDLTSRQVCRSMKF*I*MTKNFDNITQPFLEVS*PIS---NLPL 195
           K++NK     Y  +L+ RQ+C    F   M  NF+  T+  + +S  +S   NLP+
Sbjct: 70  KSQNKTLSREYLEELSERQLCLEYIF-SRMCPNFNLETKNLISISKKLSENENLPV 124


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 426 KNQQNKNELIIENMSFNEVRVVLDEN 349
           KN +N+N  I++    NE++    EN
Sbjct: 38  KNNENENSYIVDKKRMNELKKFAKEN 63


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -3

Query: 399 IIENMSFNEVRVVLDEN*K*ILEISIYT*FDIKT----GLPINEILNLDDEEFR 250
           +I ++ FN V        + + ++ +Y  F  KT    G P+NE+ NLD  E R
Sbjct: 326 VINHLEFNRVEAA-----QVLTDLDVY--FTYKTFALRGTPVNELPNLDPSESR 372


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 107 SAPEWGKRRRKRQVTVSPPYVVYMLPDADIMED 205
           SAP +G RR +RQ   S P     LP     ED
Sbjct: 240 SAPGYGVRRSRRQRMQSRPVAYTSLPADAHFED 272


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 29   YENLKEDILEKIRKLEEERHT 91
            YE LK+ ++  ++ LEE RH+
Sbjct: 1116 YERLKKIVVSCLKSLEEARHS 1136


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 282 EILNLDDEEFR*HYSALSRSFLTNLQSSIM 193
           EIL +DD  F  +++ L +SF  N +S I+
Sbjct: 358 EILIMDDFRFMHYWNNLCQSFFENSRSLIL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,891
Number of Sequences: 5004
Number of extensions: 44104
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)