Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1625 - 28219006-28219041,28219150-28219227,28219318-282193... 28 4.0
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 28 5.2
04_04_0412 + 25023758-25023826,25023927-25023991,25024082-250241... 27 6.9
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.9
12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447... 27 9.1
02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590 27 9.1
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 27 9.1
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 27 9.1
>07_03_1625 -
28219006-28219041,28219150-28219227,28219318-28219389,
28219468-28219567,28219632-28219708,28219802-28219872,
28219987-28220066,28220143-28220194,28220376-28220431,
28220506-28220551,28220631-28220682,28220787-28220888,
28220967-28221021,28221101-28221180,28221271-28221321,
28221354-28221377,28221742-28221833,28221928-28222057,
28222156-28222230,28222433-28222543,28222637-28222693
Length = 498
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 44 EDILEKIRKLEEERHTVDLWSSAPEWGKRRRKRQVTVSPPYVVYMLPDADI 196
++I+E +KL+EE + LW +A + R SP VY A +
Sbjct: 170 DEIVELAKKLQEETNIKPLWGTAQLFMHPRYMHGAATSPEVKVYAYGAAQV 220
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 98 LWSSAPEWGKRRRKRQVTVSPP 163
+WSSA W RK Q+T SPP
Sbjct: 118 IWSSACFWKVAWRKLQLTTSPP 139
>04_04_0412 +
25023758-25023826,25023927-25023991,25024082-25024145,
25024806-25024940,25025029-25025160,25025470-25025553,
25025638-25025736,25025992-25026083,25026280-25026352,
25026476-25026628,25026721-25026840,25026926-25026979,
25027188-25027271,25027431-25027505,25027585-25027728,
25028016-25028123,25028340-25028459,25028909-25029102,
25029193-25029319
Length = 663
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 308 SNHVYIEISKIYFQFSSKTTRTSLKDIFSMI 400
SNH Y+E K + F+S T +KD + +I
Sbjct: 336 SNHQYLECIKSAYDFASGELLTLMKDKYDLI 366
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 365 WFWTKTENKFWKFLYTHDLTSRQ 297
W W KT FW+ +Y + RQ
Sbjct: 987 WLWPKTGEVFWQGVYERERNMRQ 1009
>12_02_0067 +
13144002-13144203,13144471-13144529,13144638-13144713,
13144802-13144873,13144969-13145056,13145365-13145601,
13145705-13145910,13145946-13146122,13146220-13146251,
13146330-13146432,13146547-13146815,13148029-13148175,
13148272-13148412,13148509-13148595,13148841-13148931,
13149093-13149192,13149292-13149352,13149442-13149663,
13149756-13149872,13149972-13150061,13150168-13150344
Length = 917
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +2
Query: 161 PYVV---YMLPDA--DIMEDW---RLVRKLLERAE*CYRNSSSSKFKISLIGKPVLMSNH 316
PYVV Y LP D + W R+VR + A+ C++ I +P +M+NH
Sbjct: 140 PYVVLYHYDLPQVLHDQYKGWLHPRIVRDFVRFADFCFKTYGHKVKNWFTINEPRMMANH 199
Query: 317 VY 322
Y
Sbjct: 200 GY 201
>02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590
Length = 331
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 264 DEEFR*HYSALSRSFLTNLQSSIMSASGSMYTT*GGDTVTCLLRLLF 124
+EE+ H L+R +L +++ G+M+ GGD + L ++ F
Sbjct: 155 NEEYCKHMQRLARKLFEHLSTALGLDGGAMWEAFGGDELVFLHKINF 201
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 70 VGRRTAYRRPLV*RPRVGKEKTQKT-SHRISPLRRVHATRRRHNGRLEIGQETSRKG*VM 246
VGRR A PL KT +HR L+++HAT RR + ++ E G V
Sbjct: 144 VGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVGWVG 203
Query: 247 LSKFF 261
L + F
Sbjct: 204 LYEGF 208
>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 263 SSKFKISLIGKPVLMSNHVYIEISKIYFQFSSKTTRTSLKD 385
S K + +I + V NH+ + S I FQF S + +++ D
Sbjct: 1288 SGKIEFGVINQSVSAFNHILSDFSLIVFQFQSISAFSAVID 1328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,261
Number of Sequences: 37544
Number of extensions: 242814
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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