Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-9|AAK29918.2|  640|Caenorhabditis elegans Hypothetical ...    31   0.50 
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   3.5  

>AC024798-9|AAK29918.2|  640|Caenorhabditis elegans Hypothetical
           protein Y48G9A.3 protein.
          Length = 640

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +2

Query: 32  ENLKEDILEKIRKLEEERH--TVDL-WSSAPEWGKRRRKRQVTVSPPY-VVYMLPDADIM 199
           + + ED++ K  K ++E H  T++  W++A EW  R  K  ++++  +     L  A   
Sbjct: 382 DKIAEDVISKTAKADKESHDGTIEAQWNAAAEWAIRLSKPAISLTNAFKEASKLAPAVKY 441

Query: 200 EDWRLVRKLLER 235
             +R++  +LER
Sbjct: 442 IGYRVLADILER 453


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 289 RQTCLDVKSCVYRNFQNLFSVFVQNHPYFIKRHIF 393
           ++T     SC Y++F + F +F   HP F    IF
Sbjct: 70  KETAEPQPSCCYQSFLSFFQLFFSFHPTFFCIQIF 104


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 32  ENLKEDILEKIRKLEEERHTVDLWSSAPEWGKRRRKRQ 145
           E +++D +E+ ++ EE RH         EW K+R+KR+
Sbjct: 651 EAMRQDEMERRKREEESRHRRKA-EERDEWEKQRQKRR 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,578
Number of Sequences: 27780
Number of extensions: 235167
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)