Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.62 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 41  KEDILEKIRKLEEERHTVDLWSSAPEWGKRRR 136
           K+  + K +K+E  RH  D W  A E  K  R
Sbjct: 848 KKHQIRKQKKMELARHAADKWRGAIEKRKTLR 879


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 185 DADIMEDWRLVRKLLER 235
           D +++EDW+ V  +L+R
Sbjct: 467 DNEVIEDWKFVAMVLDR 483


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 14 EKWLAYENLK 43
          EKW+ Y N+K
Sbjct: 33 EKWVVYNNIK 42


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 14  EKWLAYENLK 43
           EKW+ Y N+K
Sbjct: 154 EKWVVYNNIK 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,243
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)