Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 29 0.42
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 1.3
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 3.9
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 3.9
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 5.2
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 6.8
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 6.8
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 6.8
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 9.0
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 29.1 bits (62), Expect = 0.42
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 342 DSRRSTSPLCTWSLRPKVVIC*DARTFWKSTGAWRTRSQRWLLS 473
+ R P+ + LR + ++C F+ +T W++R Q W+++
Sbjct: 1026 EKREDIRPIAMFRLRGEFLLCYSDFAFFVNTNGWKSR-QSWMIN 1068
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 248 SVLPHLTRPSDVVEVLKSYSVAYRSRR--TSLARLAEKYESSLYMEPAAEGGYL 403
S+ P +T V SY ++R+ T + R+ + +SLY P A+G Y+
Sbjct: 391 SITPQVTEHDSKPPVRISYDHRCKTRKQSTRICRIPPETMASLYCGPEADGKYV 444
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 449 CSPGASGLPEGSRISTDNHLRPQAPCTERTRTSPRVWPG 333
CSP S L G TDNH+ E R +VW G
Sbjct: 58 CSPTRSMLLSG----TDNHIAGLGQMAETVRRFSKVWGG 92
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 143 PRTELDRFYSRLSLHAM 93
PRTE D+F S ++LHA+
Sbjct: 331 PRTETDQFDSSMNLHAI 347
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 230 ETELAKSVLPHLTRPSDVV---EVLKSYSVAYRSRRTSLARLAE 352
E ++ KS+LPHL R V+ + ++ + Y R LAR AE
Sbjct: 289 EHKVTKSILPHLPRELQVLLESKRVQKLTEEYDPARMFLARWAE 332
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 17 VLQSEVNVMVTEPELEGEPPVTESGAWREVTADCRIDLVPFSVQF 151
+ + +++ EPEL P S R VT C I L+ F
Sbjct: 15 IFTDDDDMITIEPELNKNPKDCNSKRKRSVTECCEIRLITSKCDF 59
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 352 EVRVLSVHGACGRRWLSVEMREPSGSPLAPGEQGLSGGSF---LPQNE 486
+VR L+ GA +R E+ + S PL GE+ + GGSF P NE
Sbjct: 144 DVRELTKPGAV-KRVFHFEL-DVSNYPLPEGEEWMVGGSFGVMAPNNE 189
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 329 TSLARLAEKYESSLYMEPAAEGGYLLRCANLLEVHW 436
++ +LAE + ++ PAA+G Y N V+W
Sbjct: 233 SAFVKLAEALNCAAFIMPAAKGFYSEEHKNYAGVYW 268
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = -1
Query: 197 FDTKAQRTYDLVDAYRTEPRT--------ELDRFYSRLSLHAMHLIQ*PVALL 63
F K + ++ RTE +T E+DRFY++L L + PV+++
Sbjct: 98 FSGKQDQKSKVIQCLRTERKTIPDDLVEDEVDRFYNKLGLDDYYFQMEPVSII 150
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 359 ESSLYMEPAAEGGYLLRCANL--LEVHWRLENKVSAVAPFYHR 481
+S EP E LL +E H+ E+ S+ +P+YH+
Sbjct: 441 QSRYNWEPILENRSLLHLNRPPPIETHYSYESNNSSFSPYYHK 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,277
Number of Sequences: 5004
Number of extensions: 46336
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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