Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 31 0.56
07_03_0364 - 17281356-17281820 30 1.3
01_06_1619 + 38692301-38692405,38693013-38693622,38693753-386938... 30 1.3
09_01_0007 + 212984-213949 29 1.7
09_01_0006 - 206409-207464 29 1.7
03_05_1088 + 30301654-30303480 29 2.3
07_03_0514 + 18984375-18985865 29 3.0
02_01_0771 - 5748604-5749500 29 3.0
07_03_1796 + 29609818-29610274,29610427-29610908,29611547-296117... 28 4.0
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 28 5.2
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 28 5.2
08_01_0578 + 5139324-5140190 27 6.9
01_01_0595 - 4430738-4430785,4430904-4432679 27 6.9
12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323... 27 9.1
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 27 9.1
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 27 9.1
07_01_0013 - 99952-100413,100534-100704 27 9.1
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364... 27 9.1
04_02_0014 - 8546511-8546533,8546761-8547010 27 9.1
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -1
Query: 464 PPLRPCSPGASGLPEGSRISTDNHLRPQA--PCTERTRTSPRVWPGTSDAIY-TPPNNSS 294
PP +P + P GS +T ++ P P T + SP PG++ Y +PP++S+
Sbjct: 447 PPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTP-SHPSP---PGSTTPSYPSPPSSST 502
Query: 293 TPQQH 279
TP H
Sbjct: 503 TPSYH 507
>07_03_0364 - 17281356-17281820
Length = 154
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 VIRWRIDRVGRPWPDSRRSTSPLCTWSLRPKVVIC*DARTFWKSTGAWRTRSQ-RWLLS 473
V+ D RP P RST ++RP V A TF+ + A RSQ RWL++
Sbjct: 85 VLATSADHPSRPKPCHHRSTRAELVTTMRPHVA----ATTFFADSAAAAARSQRRWLVA 139
>01_06_1619 +
38692301-38692405,38693013-38693622,38693753-38693829,
38693999-38694817
Length = 536
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 332 TSDAIYTPPNNSSTPQQHRWVWSDVVAQIWLVRFREP 222
T DA+ T + Q WVW D AQ W++ F +P
Sbjct: 113 TDDALLTRNVIDMSGQTQAWVWVD-AAQAWVLYFSQP 148
>09_01_0007 + 212984-213949
Length = 321
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 326 DAIYTPPNNSSTPQQHRWVWSDVVAQIWLVRFREPP 219
D IY PP P QH D+ ++W +F+ PP
Sbjct: 88 DHIYKPPPARRRPHQHHTTLFDLSRKVW-PQFQHPP 122
>09_01_0006 - 206409-207464
Length = 351
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 326 DAIYTPPNNSSTPQQHRWVWSDVVAQIWLVRFREPP 219
D IY PP P QH D+ ++W +F+ PP
Sbjct: 88 DHIYKPPPARRRPHQHHTTLFDLSRKVW-PQFQHPP 122
>03_05_1088 + 30301654-30303480
Length = 608
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 SVAYRSRRTSLARLAEKYESSLYMEPAAEGGY-LLRCANLLEVHWRLENKV 454
S + + T +A +A K L +EPA EGGY LL E W N+V
Sbjct: 540 SASSACQNTEVAEIASK--ELLCLEPAEEGGYVLLSNMYAAEGQWNYSNEV 588
>07_03_0514 + 18984375-18985865
Length = 496
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 464 PPLRPCSPGASGLPEGSRISTDNHLRPQAP--CTERTRTSPRVWP 336
PP P + +G P+GS TD +L P ERT+ VWP
Sbjct: 317 PP--PAAESGTGAPDGSEHPTDANLDELLPEGFLERTKGRGMVWP 359
>02_01_0771 - 5748604-5749500
Length = 298
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 2 LTNLQVLQSEVNVMVTEPELEGEPPVTESGAWREVTADCRID 127
+T Q LQ E + EP+ + + ES W ++ A+ R D
Sbjct: 1 MTTAQPLQHEHDPSPPEPDADADDEEEESRVWSQIKAEARRD 42
>07_03_1796 +
29609818-29610274,29610427-29610908,29611547-29611755,
29612111-29612177,29612252-29612302
Length = 421
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 287 EVLKSYSVAYRSRRTSLARLAEKYESSLY 373
+ L S++ A ++R+ L LAEKY +SLY
Sbjct: 133 QALHSWANADHAQRSKLRLLAEKYSTSLY 161
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 138 NGTRSILQSAVTSRHAPDSVTGGSPSNSGSVTITL 34
NG + A+ H PD + G +N+G V++TL
Sbjct: 507 NGLAAHHSIAMAHHHQPDLIGTGGAANAGGVSLTL 541
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 437 ASGLPEGSRISTDNHLRPQAPCTERTRTSPRVWPGTSDAIYTPPNNSS 294
A LPE +R S + +P PC + PRV P D + N SS
Sbjct: 65 AGDLPENARRSKEARAKPMPPCHD---IVPRVAPLLQDIVKEYVNTSS 109
>08_01_0578 + 5139324-5140190
Length = 288
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 395 HLRPQAPCTERTRTSPRVWPGTSDAIYTPPNNSSTPQQHRWVWS 264
HL P PC + T P TS A+ TPP + + P + R W+
Sbjct: 6 HLPP--PCRAASTT-----PATSTALSTPPPSRAGPDELRSTWA 42
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 473 RKEPPLRPCSPGASGLPEGSRISTDNHLRPQAPCTERTRTSPRVWPGTSD 324
R PP P SP S +G+R++ +PQ T+ V G D
Sbjct: 245 RVMPPFLPPSPPPSKESDGARVAAVKEAKPQGSNKRGATTNSSVANGVED 294
>12_01_0410 -
3234836-3234958,3235636-3235776,3235899-3235949,
3236045-3236125,3236427-3236483,3236898-3236993,
3237204-3237379,3237630-3237703,3237909-3238016,
3238100-3238236,3238396-3238446,3239032-3239142,
3239291-3239363,3240322-3240398,3240641-3240706,
3241349-3241463,3242255-3242511
Length = 597
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 412 REPSGSPLAPGEQGLSGGSFLPQNEIRSRIYERVL 516
R+P+ +P A G G GG I +++YER++
Sbjct: 26 RDPAAAPAASGGSGGGGGGGAGGLNICNQVYERLV 60
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -1
Query: 350 PRVWPGTSDAIYTPPNNSSTPQQHRWVWSDVVAQI 246
P W T PP + P H W+ DV A I
Sbjct: 6 PYRWTKTKHLTERPPTHGHPPDAHPWIVLDVRAYI 40
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 390 SAAGSMYREDSYFSASLARDV----RRDLYATE*LFNTSTTSLGLVRCGSTDLASS 235
S GS + D+Y A+ DV L A + TST S+GL GS++LA+S
Sbjct: 276 SGEGSEFAVDAYAIAAAGGDVCVLDLLHLLARQGGTLTSTESIGLAVTGSSELATS 331
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 464 PPLRPCSPGASGLPEGS 414
PP RPCS +GLP+ S
Sbjct: 117 PPCRPCSATHAGLPQSS 133
>04_03_0548 -
17035394-17035749,17035761-17036295,17036325-17036458,
17037053-17037134
Length = 368
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 476 GRKEPPLRPC-SPGASGLPEGSRISTDNHLRPQAPCTERTRTSP 348
G+ + + C +P A G EGSR+S D HL Q +R P
Sbjct: 265 GQADEAVHQCHTPQAPGKEEGSRVSHD-HLLDQVTAIRPSRLRP 307
>04_02_0014 - 8546511-8546533,8546761-8547010
Length = 90
Score = 27.1 bits (57), Expect = 9.1
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 178 LCAFVSKALCDTGEGGSRNRTSQICATTSDQTQRCC*GVEELFGGV*IASDVPGQTRGEV 357
+ A + L GEG S R ++CA ++ +R L GG A ++ Q RGE
Sbjct: 1 MAAAATTPLVSMGEGASNLRPRRLCAAKENRRRR-------LNGGG--AEEILRQ-RGEG 50
Query: 358 RVLSVHGACG-RRWLSVEMREPSGSPLAPGEQG 453
R ++ G G RRW + RE G A GE G
Sbjct: 51 R-WAMRGERGVRRWEVGDARE-RGEGSAAGEAG 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,544
Number of Sequences: 37544
Number of extensions: 352942
Number of successful extensions: 1237
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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