Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   2.0  
Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66523-1|CAA91411.1|  361|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z49966-3|CAA90241.1|  361|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    28   4.7  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   4.7  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   8.1  
U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical
           protein T16H12.1 protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
 Frame = +2

Query: 20  LQSEVNVMVTEPELEGEPPVTESGAWREVTADCRIDLVPFSVQFYMHQPDR---KFSAPS 190
           L   V+   T P+   EPP T S    +   +   D  P      M +P R   K   P 
Sbjct: 54  LNQPVHFSQTNPKSTPEPPCTSSSGAGDCHENLPADGYPIENDDGMGEPARMLGKIKKPR 113

Query: 191 YRKLCVILVKAAHETELAKSVLPHLTR 271
            R  C I  K +H   + K V   L+R
Sbjct: 114 SRLEC-IFCKDSHTRSIIKGVKSRLSR 139


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 389 RPQAPCTERTRTSPRVWPGTSDAIYTPPNNSSTPQQHR 276
           +PQ PC +R    PR   G     Y  PN  + PQ  +
Sbjct: 185 QPQPPCYQRQPEPPRQTGGCLPGPYYSPNTMAPPQHQQ 222


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 389 RPQAPCTERTRTSPRVWPGTSDAIYTPPNNSSTPQQHR 276
           +PQ PC +R    PR   G     Y  PN  + PQ  +
Sbjct: 185 QPQPPCYQRQPEPPRQTGGCLPGPYYSPNTMAPPQHQQ 222


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 389 RPQAPCTERTRTSPRVWPGTSDAIYTPPNNSSTPQQHR 276
           +PQ PC +R    PR   G     Y  PN  + PQ  +
Sbjct: 185 QPQPPCYQRQPEPPRQTGGCLPGPYYSPNTMAPPQHQQ 222


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 476 GRKEPP--LRPCSP-GASGLPEGSRISTDNHLR-PQAPCTERTRTSPRVWPGTSDAIYTP 309
           G + PP  + PC P G  GLP     ++   L  P  PC E  R  P   PG       P
Sbjct: 187 GPQGPPGAVGPCGPSGIPGLPGNPGYTSPPGLPGPPGPCGEAGREGPNGTPGLKG---EP 243

Query: 308 PNNS 297
            NNS
Sbjct: 244 GNNS 247


>Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical
           protein F45H7.1 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 444 SRRQWTSRRFAHLNR*PPSAAGSM 373
           S +QWTS+ FA L   P S  GSM
Sbjct: 121 SSKQWTSQIFAELESIPSSRRGSM 144


>Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical
           protein F57B7.3 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 418 PSGSPLAPGEQGLSGGSFLPQN 483
           P G P APG+QGL G    P N
Sbjct: 94  PPGPPGAPGDQGLDGAPGQPGN 115


>Z66523-1|CAA91411.1|  361|Caenorhabditis elegans Hypothetical
           protein M05D6.1 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 164 PDRKFSAPSYRKLCVILVKAAHETELAKSVLPHLTRPSDVVEVLKSYSVAY 316
           P RK SAPS  ++ + LVKA  +   A  V   + +PS++   +K+  V Y
Sbjct: 110 PQRKMSAPSTVRVFIQLVKALQDMHEAGFVHRDV-KPSNMALGVKNEQVVY 159


>Z49966-3|CAA90241.1|  361|Caenorhabditis elegans Hypothetical
           protein F35C11.3 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 164 PDRKFSAPSYRKLCVILVKAAHETELAKSVLPHLTRPSDVVEVLKSYSVAY 316
           P RK SAPS  ++ + LVKA  +   A  V   + +PS++   +K+  V Y
Sbjct: 110 PQRKMSAPSTVRVFIQLVKALQDMHEAGFVHRDV-KPSNMALGVKNEQVVY 159


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 376 GACGRRWLSVEMREPSGSPLAPGEQGLSGGSFLP 477
           G  G + +  E+ EP G+P  PGE+GLSG +  P
Sbjct: 193 GITGIKGVMGEVGEP-GAPGIPGEEGLSGPTGQP 225


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 476 GRKEPPLRPCSPGASGLPEGSRISTDNHLRPQAPCTERTRTSP 348
           GR   P+R  SP     P G+R   D  +RP      R R SP
Sbjct: 62  GRSRSPIRRGSP-----PRGARADRDRPMRPSPSPPRRRRPSP 99


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 437 ASGLPEGSRISTDNHLRPQAPCTERTRTSPRVWPGTSDAIYTPPNNSST 291
           A  +P    + T   +RP +  T  T  +P +   T+     PP N++T
Sbjct: 9   APSIPSRDPVITTT-IRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTT 56


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = -1

Query: 473 RKEPPLRPCSP---GASGLPEGSRISTDNHLRPQAPCTERTRTSPRVWPGTSDAIYTPPN 303
           RK PP R  SP   G  G P   R  +  + R   P     R SPR      D   +PP 
Sbjct: 182 RKTPPRRNASPGGDGGGGSPAARRGGSAGNRRRSPP----RRGSPRRGSPRRDTRRSPPR 237

Query: 302 NSSTP 288
              +P
Sbjct: 238 RRGSP 242


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
           roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 223 GSRNRTSQICATTSDQTQRCC 285
           G   +  Q+CA+  D+T+RCC
Sbjct: 770 GWEKQCVQLCASLMDETRRCC 790


>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
 Frame = +2

Query: 20  LQSEVNVMVTEPELEGEPPVTESGAWREVTADCRIDLVPFSVQFYMHQPDRKFSAPSYRK 199
           +   V  M+      G   +    AW    A C  + +P++ +F     +  ++ P+ + 
Sbjct: 98  IHQRVGAMIEAAASAGANVIGLQEAWTMPFAFCTRERLPWT-EF----AESVYTGPTTQF 152

Query: 200 LCVILVKAAHETELAKSVLPHLTRPSDVV---EVLKSYS--VAYRSRRTSLARLAEKYES 364
           L  + VK  H+  +   +L       DV+    V+ S++  V  RSR+  + R+ +  ES
Sbjct: 153 LSKLAVK--HDIVIISPILERDEEKDDVIWNTAVVISHTGRVIGRSRKNHIPRVGDFNES 210

Query: 365 SLYME 379
           + YME
Sbjct: 211 TYYME 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,742
Number of Sequences: 27780
Number of extensions: 276528
Number of successful extensions: 1574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)