Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 0.97
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 1.3
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 26 3.0
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 3.9
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 26 3.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.8
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 25 9.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.0
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 25 9.0
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 325 LKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHI 212
LK ++E F+N++ + + V HN+ TI +G++
Sbjct: 572 LKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGNL 609
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -2
Query: 331 TILKEEEDEAFNNEISYDDT----DDIVTKQHNAAVRTIAIGHIVDKVYFCCRFF 179
T + E+EA + ++ +T D++ +++N + +AIGH++D F R F
Sbjct: 969 TSFGDVEEEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHVLDDSVFRNRDF 1023
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 488 TVCKLTQLKINWNSGFSKYCYGFFAAAVCMF 396
T+ T ++ WN F +C FF + V ++
Sbjct: 120 TILSSTDYQLEWNYCFDVHCNSFFPSFVLLY 150
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 492 RYCMQTNTIEN*LEFWVQQILLRV 421
+Y +QTN ++FW QILL +
Sbjct: 539 KYLLQTNKARENIKFWRPQILLLI 562
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 352 QTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHIV 209
++L LPT ++ED F + +DT D+ K ++ IAIG V
Sbjct: 31 KSLNTLPT--PKQEDVEFGVPLQPEDTQDLQRKLKPRHMQMIAIGGCV 76
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 479 KLTQLKINWNSGFSKYCYGFFAAAVCMFKLCYLHSILNKIISPDTNSASNN 327
K+ + +++ N SKY F V K C ++L+ I+ +TN + N
Sbjct: 402 KVMRKRVSQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPN 452
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 313 EDEAFNNEISYDDTDD 266
EDE + E YDD DD
Sbjct: 419 EDEIMDEEFGYDDDDD 434
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 512 QNYSNVVGTVCKLTQLKINWNSGFSKYCYGFFAAAVCMF 396
Q Y NV GT KL + W G S G A F
Sbjct: 46 QLYRNVEGTKAKLPPFGLEWYRGCSTVIVGNSLKAAVRF 84
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 503 SNVVGTVCKLTQLKINWNS--GFSKYCYGFFAAAVCMFKLCYLHSILNKIISPDTNSASN 330
S V+ V ++ Q I+ ++ G+S C + + C+ + CY I + P N++S
Sbjct: 1722 STVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACYPSEIYRASL-PGLNASSE 1780
Query: 329 NFKR 318
R
Sbjct: 1781 KEAR 1784
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 352 QTLT--QLPTILKEEEDEAFNNEISYDDTDDIVTK 254
Q+LT LPT+ +E+DE +++ ++T + +K
Sbjct: 242 QSLTGESLPTVSNQEKDEGVIEKVAVNNTPSVSSK 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,089
Number of Sequences: 5004
Number of extensions: 31531
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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