Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    28   5.2  
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     28   5.2  
08_02_0082 + 12059692-12060209,12060484-12060973                       27   6.9  
04_04_0881 + 29055724-29059197                                         27   6.9  

>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -1

Query: 500 NVVGTVCKLTQLKI----NWNSGFSKYCYGFFAAAVCMFKLCYLHSIL 369
           N++G + KL  LK+     W  G +  C GF      MF+   LH +L
Sbjct: 791 NLLGCIPKLLYLKVIFAQGWEDGLTVGCGGFPCLKELMFRHSRLHWLL 838


>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 460 LIGILGSANTVTGFLLLLSVCLNYVTYIVF*IKLFLQTLTQL 335
           L+  L + + +   +LLLSV   YVTYI F   L + TL  +
Sbjct: 41  LLVALEAGSVLRAVVLLLSVPFVYVTYIFFSESLAISTLVYI 82


>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 355 LQTLTQLPTILKEEEDE-AFNNEISYDDTDDIVTKQHNAAVRTIAIGHIVDKVYFCCRFF 179
           + T  +L  +L++E+   AFN+ +  D        +H+ A+  ++  H  +  + C R F
Sbjct: 1   MSTTAKLAGLLRDEQGPVAFNDAVDEDAVPVEPLTEHDDAISAMSAAHCNNMQFRCYRGF 60

Query: 178 YNS 170
           + S
Sbjct: 61  WIS 63


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 435 ILLRVFCCCCLY 400
           +LL +FCCCC+Y
Sbjct: 777 LLLVLFCCCCVY 788


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,188,322
Number of Sequences: 37544
Number of extensions: 161264
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)