Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323B04f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64643-1|CAA45917.1| 291|Homo sapiens C6.1A protein. 32 1.4
S68015-1|AAB29005.2| 321|Homo sapiens c6.1A protein. 32 1.4
BX470111-5|CAI41654.1| 291|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BX470111-4|CAO03575.1| 292|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BX470111-3|CAI41655.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BX293995-3|CAH70538.1| 291|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BX293995-2|CAO03601.1| 292|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BX293995-1|CAH70537.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BC006540-1|AAH06540.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
BC002999-1|AAH02999.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
AY438030-1|AAR30498.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 32 1.4
>X64643-1|CAA45917.1| 291|Homo sapiens C6.1A protein.
Length = 291
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 201 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 244
>S68015-1|AAB29005.2| 321|Homo sapiens c6.1A protein.
Length = 321
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 231 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 274
>BX470111-5|CAI41654.1| 291|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 291
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 201 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 244
>BX470111-4|CAO03575.1| 292|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 292
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 202 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 245
>BX470111-3|CAI41655.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 226 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 269
>BX293995-3|CAH70538.1| 291|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 291
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 201 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 244
>BX293995-2|CAO03601.1| 292|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 292
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 202 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 245
>BX293995-1|CAH70537.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 226 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 269
>BC006540-1|AAH06540.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 226 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 269
>BC002999-1|AAH02999.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 226 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 269
>AY438030-1|AAR30498.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex subunit 36 protein.
Length = 316
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 364 KLFLQTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRT 230
K+ L++ +LP IL +EE +A+ S D VTK HN +V T
Sbjct: 226 KVCLESAVELPKILCQEEQDAYRRIHSLTHLDS-VTKIHNGSVFT 269
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,548,553
Number of Sequences: 237096
Number of extensions: 993878
Number of successful extensions: 2364
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2364
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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