Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 401  KKMQQ*PKV*ESVDLISGANVGAGAEKIYM 490
            +KM Q PK+  +VD+  G N G G E+I M
Sbjct: 1259 EKMDQKPKMDFNVDIRYGKNCGKG-ERIDM 1287


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 261  SLKKFLSTYPRRKMYFK*NKTAPNFIC 341
            S++   +  PRR MY + N  APN  C
Sbjct: 1675 SIRSHSTWDPRRHMYEELNHCAPNRRC 1701


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 262 LHKHYQHLHM 233
           LH HYQH H+
Sbjct: 4   LHIHYQHYHI 13


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 PNHTSYCNQSKIIKENAAV 417
           P    YC++S  +KEN +V
Sbjct: 119 PYQCEYCSKSFSVKENLSV 137


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = +1

Query: 121 EERNVVQCIIVFLIFHIMYFTYL 189
           + R+ +   + F+IF+I+Y++++
Sbjct: 445 DRRSRIVFPVAFIIFNILYWSFI 467


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 267 KKFLSTYPRRKMYFK 311
           KK  S  PRRK +FK
Sbjct: 433 KKSTSKKPRRKFHFK 447


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 330 LALFYFI*STFFFADKWK 277
           LAL+Y++ STF   D WK
Sbjct: 16  LALYYYLTSTF---DFWK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,044
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)