Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    29   0.32 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   1.7  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.2  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   3.0  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    26   3.9  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   6.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.8  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 9   RSWLLYCKLLVPTISRFVKSALAGFVVHVKIMRIVHRSS*FLLTRRQYN 155
           ++W+   +LL  T S F K+A    + HV +  +VH S  F  T+  ++
Sbjct: 221 KAWVFQSRLLFCTASLFEKTACFSGIGHVLLKDLVHESRTFGWTKLNWS 269


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 QKTFQNQSAIYVILDGCNYICSAY*LYKL 436
           +KTF     IY  L+  +++C+AY  YKL
Sbjct: 214 KKTFLEYQHIYNDLERLSHLCTAYDYYKL 242


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 303 FFCSQKFEYYANCCNLLFHIPLFEIYFKHIVIFATYHYYILCYV-LKTLFYY 151
           FFC+ +  +YA    ++  +P   ++F +I++  ++ Y ++ YV  + L Y+
Sbjct: 180 FFCTFQLLFYAFRPLVVRRLPFTLMHFWNIIVQFSFDYLVVRYVGWRALAYF 231


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 257 FFSIFHYLKYTSNTLSFLLPII 192
           +  +FHYL ++SN  +F+ P+I
Sbjct: 195 YSKLFHYLLHSSNLKAFINPLI 216


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
 Frame = -1

Query: 461 MYVKIALIAAYIINMLNKYNYSHPKLHKL---------LTDFGMFSGHELLINLAISAHR 309
           ++V  +    Y  +    + Y +P+LHKL                S    L +L      
Sbjct: 124 LFVMFSDFGIYWAHRFLHHRYVYPRLHKLHHKWIICTPYASHAFKSADGFLQSLPYHLFP 183

Query: 308 LYFSAHKNSNIML-TVVTFFSI-FHYLKYTSN 219
            +F  HK + + L T V F+SI  H  KY SN
Sbjct: 184 FFFPLHKLTYLALFTFVNFWSIMIHDGKYISN 215


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 305 YFSAHKNSNIMLTVVTFFSIFHYLKYTSNT 216
           YF+ HK+ N++  +VT      YL++   T
Sbjct: 227 YFTEHKSVNLLYKLVTSRQAIKYLEHILRT 256


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 377 LLTDFGMFSGHELLINLAISAHRLYFSAHKNSNIML 270
           LL  FGMFS   LLIN++ S +  Y   H +S  ++
Sbjct: 726 LLRRFGMFSEATLLINMSGSKNLKYI--HSSSRDLI 759


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 190  IMIGSKNDNVFEVYFK*WNMEKKVTTVSIIFEFL*AEKYNL*AEIA 327
            I++   N  V  V+ +  ++E +VT     +EFL AEK ++  ++A
Sbjct: 888  ILVERANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLA 933


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,780
Number of Sequences: 5004
Number of extensions: 39832
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)