Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    30   0.98 
06_01_0192 - 1485444-1485491,1485582-1485648,1485780-1485890,148...    28   4.0  

>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 410  KYNYSHPKLHKLLTDFGMFSGHELLINLAISAHRLYFSAHKNSNIMLTVVT 258
            KY   H K + LL     FS H +L NLA     +  SAH+    M+ V++
Sbjct: 1920 KYGDPHVKANALLQ--AHFSRHTILGNLAADQREILLSAHRLLQAMVDVIS 1968


>06_01_0192 -
           1485444-1485491,1485582-1485648,1485780-1485890,
           1486278-1486343,1486814-1486878,1486952-1487014,
           1487215-1487337,1487777-1487887,1488030-1488148,
           1488721-1488806,1488918-1489267
          Length = 402

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 318 CS-QIVFFCSQKFEYYANC--CNLLFHIPLFEIY-FKHIVIFATYHYYILCYVLKTLFYY 151
           CS  ++ FC+  F YYA       +F   L  +   K++  +  + Y  +   + TLFYY
Sbjct: 325 CSISVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYY 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,532,872
Number of Sequences: 37544
Number of extensions: 192393
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)