Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83303-1|AAC51337.1|  162|Homo sapiens line-1 reverse transcript...    31   2.4  
AM774225-1|CAO81741.1|  840|Homo sapiens collagen type VI alpha ...    29   9.9  

>U83303-1|AAC51337.1|  162|Homo sapiens line-1 reverse transcriptase
           protein.
          Length = 162

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = -1

Query: 455 VKIALIAAYIINMLNKYNYSHPKLHKLLTDFGMFSGHELLINLAISAHRLYFSAHKNSNI 276
           VK++L A YII  L     S   L KL+++F   SG++  IN   S   LY +  +  + 
Sbjct: 21  VKLSLFANYIIVYLENPMVSAQNLLKLISNFSKVSGYK--INAQKSQAFLYTNNKQTESQ 78

Query: 275 MLTVVTFFSIFHYLKY 228
           +++ + F      +KY
Sbjct: 79  IMSELPFTIASKRIKY 94


>AM774225-1|CAO81741.1|  840|Homo sapiens collagen type VI alpha 6
           protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 416 LNKYNYSHPKLHKLLTDFGMFSGHELLINLAIS-AHRLYFSAHKN 285
           L+ +    P L+ L  +FG F G  L I  A+  AHR YFSA  N
Sbjct: 80  LSTFKGRSPMLNHLRKNFG-FIGGSLQIGKALQEAHRTYFSAPAN 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,398,580
Number of Sequences: 237096
Number of extensions: 1257895
Number of successful extensions: 5807
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5807
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)