Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0838 - 8185083-8185910                                           31   0.74 
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233...    29   1.7  
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077...    28   5.2  
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831     27   6.9  
03_05_0490 + 24866418-24867008                                         27   6.9  

>08_01_0838 - 8185083-8185910
          Length = 275

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 115 DLEAALAGEQGESTSMETPADTGDVDAPEDDNLD 216
           D   A AGE+G S+S  +    GD +  EDD+ D
Sbjct: 84  DSSGASAGERGRSSSHRSDVKLGDAEEEEDDDED 117


>06_03_0697 -
           23621808-23622127,23622194-23622932,23623298-23623327,
           23624183-23624200,23625176-23625268,23625665-23626123
          Length = 552

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 AALAGEQGESTSMETPADTGDVDAPEDD 207
           A LAG QGES +M  P   GD D  +D+
Sbjct: 8   ARLAGSQGESPAMLHPNGDGDGDGGDDE 35


>07_03_1699 -
           28807154-28807218,28807324-28807466,28807570-28807715,
           28808142-28808242,28808314-28808365,28808483-28808538,
           28808616-28808721,28809314-28809358
          Length = 237

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 11/35 (31%)
 Frame = +1

Query: 448 DQENVEDEHGE-----------WVGSDHDYSYDEL 519
           D + VE+E GE           W G+D DY+YDEL
Sbjct: 87  DDQVVEEEEGEGIVLGGAPRYPWEGTDRDYNYDEL 121


>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
          Length = 512

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 171 GCLHTRALTLLTSKSSF*IKTSLLFLFLLQRRIKYHI 61
           GC HT   + LTS +   ++T+ + +   Q R KYHI
Sbjct: 214 GCAHTFCYSCLTSYTQEKLQTNKVPIRCPQLRCKYHI 250


>03_05_0490 + 24866418-24867008
          Length = 196

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 115 DLEAALAGEQGESTSMETPADTGDVDAPED 204
           D  AA+A E+GE+  ++  A  GD +  E+
Sbjct: 43  DAGAAVAAEEGETVILDAAAGEGDAEGEEE 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,484,717
Number of Sequences: 37544
Number of extensions: 105542
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)