Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323B01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    28   4.7  
Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 418 LVTEEDVRGEDQENVEDEHGEWVGSDH-DYSYDE 516
           LV++E   G+ +E  ED+      SDH DY Y++
Sbjct: 96  LVSDESTTGDHEEEEEDDEDGDDESDHNDYDYED 129


>Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical
           protein F17C11.7b protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 348 IIHYFVFLRFRFFGWRCFRQGI 283
           II Y+V LR+    W+C + G+
Sbjct: 325 IIPYYVHLRYSKINWKCDKNGV 346


>Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical
           protein F17C11.7a protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 348 IIHYFVFLRFRFFGWRCFRQGI 283
           II Y+V LR+    W+C + G+
Sbjct: 341 IIPYYVHLRYSKINWKCDKNGV 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,516,578
Number of Sequences: 27780
Number of extensions: 96369
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)