Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323A12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 0.98
11_01_0788 + 6599962-6602700 29 2.3
12_02_0189 + 15165485-15168694 28 4.0
11_06_0338 + 22479804-22480651,22480764-22482954 28 4.0
12_02_0454 + 19199063-19200757,19202201-19202287 27 9.1
09_02_0104 - 4329068-4329926,4330967-4331811 27 9.1
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029... 27 9.1
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 27 9.1
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727 27 9.1
02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684,114... 27 9.1
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 187 GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 44
GG LDR E E ++H R H + H + H H D S++ I+
Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849
>11_01_0788 + 6599962-6602700
Length = 912
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 116 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTD 265
G Q ++ M+ EL+ ++ K L +Q+ K + LR VW + YTD
Sbjct: 669 GMQAPKNLSNME-ELQ-TLETMQASKDLAEQLSKLLKLRRVWIDNISYTD 716
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 224 GLREVWFFG--LQYTDSKGDLTWIKLYKKVMQQDVKKEN 334
G+++ W G L+Y +SK +L+W K+ K+VM EN
Sbjct: 908 GIKD-WLNGCNLKYYESKLNLSWRKVLKEVMNNKESDEN 945
>11_06_0338 + 22479804-22480651,22480764-22482954
Length = 1012
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 259 VLKTEEPHLAEADRLHNLIEELLPGGRLLD 170
+++ +E L E + LH I +LL GGR+ D
Sbjct: 6 IMEKQEEALKEWEPLHESISKLLKGGRITD 35
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = -2
Query: 286 PSEVALGVGVLKTEEPHLAE-ADRLHNLIEELLPGGRLLDRELEFRVHRRHADVHLFSSG 110
P EV +G +E +E +D L +EL G LE R D HL +
Sbjct: 360 PEEVDVGFDFQPAQESEESEFSDAAEELADELSEG-------LEVRDEEEKGDKHLGNGE 412
Query: 109 NHFDSYDHTHTADKITS 59
SYD T +++ S
Sbjct: 413 QKVGSYDETSVLEEMLS 429
>09_02_0104 - 4329068-4329926,4330967-4331811
Length = 567
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 338 LQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSD 451
L+ K KF+PE A + E+ L L YL + I D
Sbjct: 267 LRQKQPGKFFPEQAAKFYVAEVLLALEYLHMLGIIYRD 304
>07_03_0960 -
22902279-22902530,22902604-22902726,22902855-22902941,
22903017-22903068,22903197-22903321,22903476-22903684,
22903990-22904191,22906205-22906309,22907264-22907325,
22907625-22907814,22907887-22907982,22908069-22908171,
22909117-22909220,22910239-22910325,22911238-22911323,
22911410-22911502,22912586-22912673,22912786-22912898,
22912989-22913111,22914473-22914524,22915185-22915286,
22915539-22915582,22915667-22915740,22915825-22915916,
22916566-22916633,22918572-22918647,22918767-22918952
Length = 997
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 521 FSRVWLGPRTKPATPRSPEGSIFHRIKSRFSP 426
FSRVW P T TP++ FH SR SP
Sbjct: 541 FSRVWYKPDTMFFTPKAYIKMDFHCPLSRSSP 572
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 312 NKTSRKRIHCSSNSEPNSILRMSPMSSYRRSH 407
N R CS+NS NS+L ++ SY S+
Sbjct: 370 NDLQSSRSQCSANSLSNSVLNINKADSYSTSN 401
>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
Length = 210
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 110 AGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTI 223
AGG+ VR+ + A LE ++ TG+QL + V+ +
Sbjct: 139 AGGEHGPVRLVRLAAGLESDVRAVPTGEQLAEVAVQNV 176
>02_01_0164 +
1146093-1146119,1146682-1146955,1147309-1147684,
1149021-1149239,1149572-1149710,1149844-1150092,
1150556-1150855
Length = 527
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 208 LIEELLPGGRLLDRELEFRVHR 143
L+EEL GG LLD L FR+ R
Sbjct: 71 LLEELAHGGDLLDATLAFRLMR 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,293,723
Number of Sequences: 37544
Number of extensions: 275380
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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