Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323A10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 32 0.32
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 31 0.42
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 31 0.56
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 31 0.74
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 28 4.0
11_06_0284 + 21909758-21913645 28 5.2
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 5.2
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 27 6.9
01_06_1435 + 37351653-37351990,37352241-37352424 27 6.9
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 421 GLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVP 257
G+EQH QG+ G QG+R ++P++H H + R P+ + PVP
Sbjct: 422 GIEQH---QGKLGVDQGKRPAPEKPRQHWPHVDQLAPLADGSRSTPESRVADPVP 473
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 504 YGSSVIDSLGLIMTDDVLGRDGLSRRIVD 418
Y S++++ LGL +D VL DG SRR V+
Sbjct: 275 YYSNLVNGLGLFTSDQVLYTDGASRRTVE 303
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -1
Query: 278 DE*WTGSARRPAWDNATNAHSTIN*KI*SFGNLDTVNHILEVLVFLIS*NKFIKLISQNH 99
+E W G A R +++ + T+ K+ +FGN D V+H + ++ N ++ +S
Sbjct: 154 NEDWRGDAARKREEHSPDKDVTLKSKLSAFGNSDEVSHSSDEVLLSQGRNPVLREVSDTE 213
Query: 98 LLSS 87
SS
Sbjct: 214 QSSS 217
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 30.7 bits (66), Expect = 0.74
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -2
Query: 427 NSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGD 248
+SG+ +LQG GKPQ QRG+ + H G R G + P ++ S P P
Sbjct: 274 HSGVASGYSLQG--GKPQQQRGEFGRLRFLPRHAGVARRRRRRGGRSPFRLVS-PSHPPP 330
Query: 247 QLGTTPQMRTVLL 209
T P M T+ L
Sbjct: 331 LSKTEPMMDTLEL 343
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 415 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 314
E H L G HG P +R + Q RH+E H
Sbjct: 275 EFHKLLNGNHGDPTDRRQRAQMNGRHDEDINHAH 308
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -2
Query: 451 GKRRTQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHR 326
G+R+ ++ N G E++G +G+ + +G++ K ++ + E R
Sbjct: 432 GERKEEEKNEGEEENGEEEGKEKELKGRKDKEKKEKGGREER 473
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 196 YIFQLIVLCAFVALSQAGLLAEPVHYSSAGAVSS 297
Y+ I LC F++ SQ LLA PV SSA V S
Sbjct: 349 YLPGTITLCLFLSWSQ--LLATPVELSSAAQVHS 380
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 355 QEPQRHNEHRGFRHGVRCSGRKLPQQ 278
QE Q H E R R+G RKLP++
Sbjct: 68 QEGQHHKEERDERYGFEIQVRKLPKR 93
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 397 QGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGR 293
+G GKP+G+ + P +EHR F G+ GR
Sbjct: 90 RGGGGKPRGEERRRGVPWSEDEHRLFLEGLDRYGR 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,090
Number of Sequences: 37544
Number of extensions: 192753
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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