Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323A10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 30 1.2
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 27 6.2
U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical pr... 27 6.2
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 27 6.2
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 27 8.1
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 27 8.1
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 27 8.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -2
Query: 478 GADHDG*CSGKRRTQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 311
G G CSG R + + G HG+ G G G G HRG RHG
Sbjct: 287 GHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 335
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -2
Query: 394 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 305
G HG P + P RH H HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -2
Query: 439 TQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPV 260
T +T + + + Q K Q + QEPQ H +H+ + + PQ S+
Sbjct: 96 TPETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQ 155
Query: 259 P 257
P
Sbjct: 156 P 156
>U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical
protein R13A1.3 protein.
Length = 430
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 103 FCEISLINLFQLIRNTKTSRI*LTVSKLPKLYIFQLIVLCAFVALSQ 243
FC +S F +TS I + + L +FQL+V+C F +LSQ
Sbjct: 306 FCPLSFSFYFLSYAFLQTSLIACSKCSIFNL-LFQLLVICVFQSLSQ 351
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -2
Query: 439 TQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPV 260
T +T + + + Q K Q + QEPQ H +H+ + + PQ S+
Sbjct: 96 TPETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQ 155
Query: 259 P 257
P
Sbjct: 156 P 156
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -2
Query: 406 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 242
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 478 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 535
Query: 241 GTTP 230
P
Sbjct: 536 QQRP 539
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -2
Query: 406 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 242
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 418 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 475
Query: 241 GTTP 230
P
Sbjct: 476 QQRP 479
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -2
Query: 406 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 242
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 415 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 472
Query: 241 GTTP 230
P
Sbjct: 473 QQRP 476
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -2
Query: 406 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 242
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 478 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 535
Query: 241 GTTP 230
P
Sbjct: 536 QQRP 539
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,835
Number of Sequences: 27780
Number of extensions: 167017
Number of successful extensions: 467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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