Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323A10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 112 ISLINLFQLIRNTKTSRI*LTVSKLPKLYIFQ 207
           + L  L  L+R  + SR+   VS+  ++YI Q
Sbjct: 208 LRLAKLLSLVRLLRLSRLVRYVSQWEEVYILQ 239


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 39 KSYFGKHFPRAEF 1
          + YFGK+FP   F
Sbjct: 4  QKYFGKNFPSTSF 16


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 100 WFCEISLINLFQLIRNTKTSRI*LTVSKLPK 192
           W  +  LIN  QL+ + K     L  SKL K
Sbjct: 140 WVLDSGLINNIQLMCSPKLLAFDLNTSKLLK 170


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 273 VVDRFRQETSLGQRHKCAQYY*LKNIKFW 187
           +VD +++  S+  R K + +  L+NI  W
Sbjct: 115 IVDDYQRNPSVVGRKKSSGWRKLRNIVHW 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,475
Number of Sequences: 438
Number of extensions: 2182
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)