Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323A05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.9  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   3.9  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   9.0  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -3

Query: 207 ISGTTDPI*KILSVFDSPFIQEGYRLYNITVRSIQVEHQ*RMFQN-RGLNSSLTFYNSKI 31
           ++   DP     SVF S      YR Y+     +Q  +Q R F N    N++  F ++  
Sbjct: 185 VTSEKDPQTNGTSVFQSITCMPAYRSYSFEELRLQDYNQGRRFGNASSTNTTSAFGSTPA 244

Query: 30  FSLST 16
           F  ST
Sbjct: 245 FGAST 249


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 302 YKNCRLINLPMYVVGIDQLVLF 367
           +K   +I++PMYV+GI  ++LF
Sbjct: 416 FKMLLMISVPMYVLGILGIILF 437


>SPBC336.05c
          |||S-adenosylmethionine-
          dependentmethyltransferase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 1  PPLHLRRK*KYFRIIE 48
          PPLH++R+ K F+I++
Sbjct: 8  PPLHVQRRRKLFKILQ 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,026
Number of Sequences: 5004
Number of extensions: 31493
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)