Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323A03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518...    32   0.32 
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868...    29   3.0  
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    28   4.0  
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118...    27   6.9  

>08_02_0110 +
           12650328-12650552,12650827-12651423,12651480-12651857,
           12651997-12652218,12652407-12652483,12652553-12652631,
           12652920-12653105
          Length = 587

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 494 PRSLELFVSRLGRAVLLASGHLVAGTHFHPPDI 396
           P  L + VSR+G+ +L+A+G  + G  FH  DI
Sbjct: 115 PCKLLIPVSRVGKKILVATGRFIPGHRFHCQDI 147


>07_03_0288 +
           16285485-16285721,16285811-16286184,16286499-16286892,
           16286917-16287806,16291189-16291446,16291518-16291628,
           16291697-16291775,16291880-16291972,16292095-16292280
          Length = 873

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 473 VSRLGRAVLLASGHLVAGTHFHPPDI 396
           V R G+ +L+A+G  + G  FH  DI
Sbjct: 340 VGRAGKKILVATGRFIPGRRFHCQDI 365


>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 339 RRHRANINILRLTVKLYTSNIWRMKMGSSHKVPTCQQHRP 458
           RRHR +  +L ++++  T  +++  +G      TC Q  P
Sbjct: 101 RRHRRHCRVLLMSLRPDTWEVYKGDVGDGDGAATCSQDEP 140


>06_03_0596 +
           22608835-22610263,22610411-22610531,22610765-22611864,
           22611969-22612327
          Length = 1002

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = +3

Query: 333 RRRRHRANINILRLTVKLYTSNI---------WRMKMGSSHKVPTCQQH 452
           R RRH++ + +L + + + +  I         WR +M  + K+P C +H
Sbjct: 632 RNRRHKSLVLVLMIVIPIVSITIILLSFAAFFWRKRMQVTPKLPQCNEH 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,838
Number of Sequences: 37544
Number of extensions: 311357
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)