Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322H12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    29   3.0  
04_03_0099 + 11185832-11185893,11186744-11186912,11186940-111870...    28   4.0  
02_01_0413 - 3028946-3031111                                           27   9.1  

>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 507 SFKKLHKIVSCLSILNCRYLYICKYIMNTCNLLLRPL 397
           +F K H  ++C S++ C Y YI  + +N  N+  R L
Sbjct: 133 TFLKSH-FLACASVVVCLYSYITTFTLNQANVYHRDL 168


>04_03_0099 +
           11185832-11185893,11186744-11186912,11186940-11187075,
           11188152-11188205,11188280-11188578
          Length = 239

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 268 ICEHFLNFANLITLSCHKNKIHKDQTSK 351
           +C+ + +FA+L+ L+CH  K  +D   K
Sbjct: 46  VCQSYSSFAHLLQLACHVEKPIEDVNKK 73


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 253 FFIYNICEHFLNFANLITLSCHKNKIHKDQTSKIRSI 363
           +FI  I E   + +NL  L    NK+H + T KI ++
Sbjct: 362 YFIGTIPESIYSCSNLTWLRLSTNKLHGELTKKIENL 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,226
Number of Sequences: 37544
Number of extensions: 201327
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)