Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322H11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   3.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   3.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.2  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   5.2  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   6.8  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   9.0  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    25   9.0  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 314 ILRSPNLNRDDWFSEVKKSVIE 379
           I+  P L RD+W  E+   VIE
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIE 137


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 117 DHLNTSQVASHCQCGHNEFYNYIYLTSIRQKNNI 218
           ++++ S    HC C  N+F    Y +   QK N+
Sbjct: 226 NNIDQSDSPQHCYCCGNKFNESYYQSQTAQKYNV 259


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 260 SNRLVIEFKFSLSAYVEIILRSPNLNRDDWFSEVKKSV 373
           S  +   FK+   A+  + L  P ++ + WF+   K +
Sbjct: 473 SETIAFAFKYKFFAFCGVPLFPPGISTNSWFASYDKGI 510


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 290 SLSAYVEIILRSPNLNRDDWFSEVKKSVIEC 382
           SLS+  EI++       DD+  +  K ++EC
Sbjct: 702 SLSSQKEILVNKAYATSDDFIMQYAKGILEC 732


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 219 QFWTSSNLVRYPGLVI 266
           + WTS  LVRYP +V+
Sbjct: 23  RLWTSEALVRYPEIVV 38


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 171 IRCDRIDNEKRLVMY*GDHNYSAEYKQRSII 79
           +  D  D E RL++    H  S++YK +++I
Sbjct: 356 VEIDNTDAEGRLILADAVHYVSSQYKTKAVI 386


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 459 KTCAIQDALKREFIVVFRTRQRSNEMHSM 373
           +  A+ D L  +F ++ + RQ++NE+  M
Sbjct: 180 RATALADRLDLDFALIHKERQKANEVSRM 208


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 366 FFTSENQSSRFKFGDLKIIST*ADKENLNSITKRLLGL--GIEPDYLMSKIEC 214
           FF   N     K   LKII+  A  EN+N     L      +E +++   I+C
Sbjct: 326 FFCKYNDPLYIKMEKLKIITMLACDENINETISELRAYVSEVELEFVKQTIKC 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,968
Number of Sequences: 5004
Number of extensions: 42093
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)