Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322H07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 131 HQVEGPSGHHRAHA 172
           H V  PSGHH + A
Sbjct: 511 HHVAPPSGHHASSA 524


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 136 SGGSVWPSSSTCLYWRDSWARSSS 207
           SG  +W    +C+  ++S  R +S
Sbjct: 64  SGSKIWQMERSCMCCQESGEREAS 87


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 327 NNVIPKVLNMSHEQNYLHRMTY 392
           NN I  + N +++ NY  ++ Y
Sbjct: 87  NNYISNISNYNNDNNYNKKLYY 108


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 409 CCPKCAARTSRPGCCCRP 462
           CCP    R  +P   C+P
Sbjct: 408 CCPGRVRRRYQPAFRCKP 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,941
Number of Sequences: 438
Number of extensions: 3092
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)