Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322H06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.14 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.24 
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   0.73 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    28   0.73 
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    27   2.2  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   5.2  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   6.8  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
 Frame = +1

Query: 13  LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIK--LDNWYQNELPKK--IKSRGKDAH 180
           LE  +K+FD       Q+++   ++  ++ +EL K   D   ++ELP+K   +S  KD H
Sbjct: 13  LEYRSKKFDKK----SQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68

Query: 181 MIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTALSNL 357
            +     + +K K+ +GK   +   L   N P+    ET +  F++   + S        
Sbjct: 69  SVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKT 128

Query: 358 KG 363
            G
Sbjct: 129 SG 130


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +1

Query: 136 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKK 303
           +EL   +++ G +A     E++++++     GK Y Q+   ++V T + V    ++E K+
Sbjct: 57  HELRAAMRALGFNAEK--SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKR 114

Query: 304 AFRKLPNIESAMTALSNLKGV 366
           AF    + E+   +L NL+ V
Sbjct: 115 AFELFDDDETGKISLRNLRRV 135


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 276 WRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHV 178
           WR+  Y I QL   F SGL   H  D FF D +
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQM 433


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +1

Query: 22  NAKEFD---SVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 159
           + ++FD    +++  P A  +KAERKTKRP      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 25  AKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEE 195
           A+E   V +L+   +    ER+ K+  +  +LD WY   +P   +S  +D     EE
Sbjct: 113 ARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLEDFEAKIEE 169


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 136 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRK 315
           +ELP+ I  +G +     E+L  L    QA  + Y    +  + +      ++  K F+K
Sbjct: 3   SELPEVI-FKGTE---FEEQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKK 58

Query: 316 LPNIESAMTAL 348
             N+E+ ++AL
Sbjct: 59  DDNVETLLSAL 69


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 76  KAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQ 204
           + ER +  P E     N   N L     SRG+ AH+  EE V+
Sbjct: 361 RRERTSSTPSEQSTSVNETANSLSNLHLSRGEIAHLRQEEYVR 403


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 147 GKFILIPIVQFYELIWSFCFTFSF*FNRLRI 55
           G F+L P V   ELI  +C  +SF  N + +
Sbjct: 346 GPFLLQPAVADDELIEDYCDIYSFGMNPIDV 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,538
Number of Sequences: 5004
Number of extensions: 46308
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)