Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322H06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463... 93 2e-19
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077... 28 5.2
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 27 6.9
04_01_0597 + 7856610-7856936 27 6.9
03_06_0343 + 33274329-33274981,33275197-33276121 27 6.9
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 27 9.1
03_06_0035 - 31201115-31203646 27 9.1
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 27 9.1
>03_05_0995 -
29545058-29545204,29545988-29546074,29546166-29546361,
29546686-29546915
Length = 219
Score = 92.7 bits (220), Expect = 2e-19
Identities = 55/168 (32%), Positives = 92/168 (54%)
Frame = +1
Query: 10 FLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIH 189
F +A E+ + L Y + +L A K PD L+++D++Y+ +LP ++ R + +
Sbjct: 7 FASGDAAEWRAALAAYDR--RLAALGK---PD-LVEVDSFYRRDLPDLLRRRDPEPFLAK 60
Query: 190 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 369
ELV+L++WK +RGK+ P+L +K V + KAF LP++ A+T L+ LKGVG
Sbjct: 61 PELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFAALPDLRKAITELTVLKGVG 120
Query: 370 XXXXXXXXXXXXPEIAPFMADECVQAIPEMEGSDYTAREYLNFVSHIR 513
P++APFM+DE + A +YT ++YL F ++
Sbjct: 121 PATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYLAFAEKLQ 167
>12_02_0683 +
22006770-22006935,22007030-22007274,22007524-22007727,
22007847-22007939,22008015-22008107,22008196-22008537,
22008675-22008737,22008812-22008892
Length = 428
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 297 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 401
E+G+ +T + R+R R Q N +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -3
Query: 303 LFRLLHHSSWRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHVRIFTPRFDLLGKFILIPI 124
LFR+ H + HF +I L+ E L+ F H +FT F L+ K L P+
Sbjct: 973 LFRVYAHI-YHTHFQKIVSLKEEA--------HLNTCF-KHFTLFTWEFKLIDKAELAPL 1022
Query: 123 VQFYELIWSFC 91
+ E I S C
Sbjct: 1023 IDLIESIVSVC 1033
>04_01_0597 + 7856610-7856936
Length = 108
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 273 ATSCDARDEKGL-PQTAQYRIRD--DRSKQSQRRGNGHSISVISCR*SRNSTVYG*RMRP 443
A AR +K L PQ ++R + D +Q++ RG+G S R +V RP
Sbjct: 33 ALQASARKKKALEPQARRWRTAEGADEPQQAKARGSGRKAMASSKRGKGQRSVGADAQRP 92
Query: 444 GD 449
G+
Sbjct: 93 GE 94
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 207 HEMETGQRKILPAV--VVSDKSEHATSCDARDEKG 305
HEM ++LP V V +D EH T+ + RD+ G
Sbjct: 460 HEMFAAVERLLPEVDLVPADVGEHLTAKNPRDDAG 494
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 376 WPFPRL*DCLERSSRIRYWAVCGRPFSSLASQLVAC 269
WPFPRL D + A CG S+ L AC
Sbjct: 110 WPFPRLLDAIAFRPLPCALACCGSSAPSVVRHLRAC 145
>03_06_0035 - 31201115-31203646
Length = 843
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 232 KFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLK 360
+F P+ +YL+ P AV + + FR P+ S ++ ++K
Sbjct: 37 RFVPRDNYLLSCGAPAAVQLDDGRTFRSDPDSASFLSTPVDIK 79
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 341 VIADSILGSLRKAFFVSCITARGVFTFIRYDNCG*NF 231
VI D LGS ++AF + A +RYD NF
Sbjct: 897 VIGDPSLGSKQRAFIIDAARALDKAKMMRYDEKSGNF 933
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,327
Number of Sequences: 37544
Number of extensions: 304819
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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