Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322H03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    27   6.9  
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    27   9.1  

>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  R*GRCSNCIQNWVNFYAIENVKK 88
           R G C+NCI  W +   I++V+K
Sbjct: 168 RRGYCTNCISRWYSDIPIDDVRK 190


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 297 LRKLLSYCTMILLK*KKSNFFYFLCLQTGRD 205
           LRK LS+C  +LL+  + N+  ++   TG D
Sbjct: 365 LRKKLSFCVGLLLRLIRKNYRIYVTCTTGYD 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,679
Number of Sequences: 37544
Number of extensions: 190716
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)