Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322H02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 44 2e-05
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 36 0.004
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 32 0.045
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 27 2.2
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 3.0
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 3.9
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 3.9
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 25 6.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 6.8
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 6.8
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 9.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.0
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 9.0
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/91 (28%), Positives = 46/91 (50%)
Frame = +2
Query: 8 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFK 187
V+ PN L R Q P F + + K+D+++YL+ +Y + VV V+++I GK
Sbjct: 10 VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68
Query: 188 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 280
++ + G V + K V + + F YP+
Sbjct: 69 RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 65 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 202
N + FH ++ K+ IKN ++K+Y V V + T I KK VK
Sbjct: 79 NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 32.3 bits (70), Expect = 0.045
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 65 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 202
N + FH ++ K+ IK + K+Y V V + T I KK VK
Sbjct: 79 NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 239 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 358
F+T+ +T+ YPD+ +K + ++ + S F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 248 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 382
+PK T + + EK EEEE + L+ + + +DH P
Sbjct: 1 MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 275 PDLFEKSINEEEEHAKSLDESKKNF---RKY 358
PDL E+S +EE + S E K NF RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 311 EHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI*SFI 418
E+ +++D ++F+K + NKS+P S+ + F+
Sbjct: 569 ENVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFV 604
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Frame = +2
Query: 86 SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIK-------EDDVKVAFV 244
S+E ++K + ++ + T +N + KK+ K +++K EDD+
Sbjct: 297 SVEDDSLELKEITPEALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELE 356
Query: 245 TLPKTMTFKYPDLFEKSINEEEEH 316
K T ++ + ++EE EH
Sbjct: 357 IEVKPKTTALDNIEKSKLSEENEH 380
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 41 RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 148
RP ++LP ++ SM T + + +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 245 TLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 397
T K TF + S+ EE++ + DE + ++ + K +P+I ++
Sbjct: 245 TTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNY 295
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 17 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV 142
P+ + LV +P+ +PN+ +++ +YDI L Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 311 EHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI*SFINTN 427
+H+K LD+ + F +D K+ PD+ + S+ ++ NT+
Sbjct: 723 DHSK-LDDDLEKFASTLDPIKTTPDLANDSSLLNWANTD 760
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 149 VDVRTKINMGKFKKDVVKGYVIKEDDVKVA 238
V+ R ++N+G V K Y IKED K A
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPA 292
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 305 EEEHAKSLDESKKNFRKYIDHNKSRPDI 388
++E S + +KNFR+ ++ + S P+I
Sbjct: 110 KQEQLDSFEILRKNFRETLEESSSNPNI 137
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 293 SINEEEEHAKSLDESKKNFRKY-IDHNKSRPDIPS 394
SI+ EEH ++D+S R Y +H+ D PS
Sbjct: 319 SISSAEEHPSNIDDSSIERRHYDSNHSSQIRDHPS 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,786
Number of Sequences: 5004
Number of extensions: 30215
Number of successful extensions: 117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -