Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322H02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0070 + 13045122-13045715 36 0.020
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577... 29 3.0
05_07_0307 - 29111643-29112104,29112222-29113214 29 3.0
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 27 6.9
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 27 6.9
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 27 9.1
>07_03_0070 + 13045122-13045715
Length = 197
Score = 35.9 bits (79), Expect = 0.020
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Frame = +2
Query: 8 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 181
+ N +KL+ P P L ++ F +K DI+ LE +Y V +VRT +NM +
Sbjct: 10 IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66
Query: 182 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 343
KK ++ + D K A+VTL + PDLF + E E A + +K
Sbjct: 67 GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121
>11_01_0701 -
5774234-5774404,5774456-5774456,5774558-5774763,
5775157-5775303,5775423-5775628,5776391-5776580
Length = 306
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +2
Query: 215 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 370
KED+ A + P YPDLFE+ E H+ S++ + KK +Y HN
Sbjct: 42 KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99
>05_07_0307 - 29111643-29112104,29112222-29113214
Length = 484
Score = 28.7 bits (61), Expect = 3.0
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Frame = +2
Query: 8 VFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMG 178
VF N+ +L + P ++ +H +C+ E + NY Y V ++ I
Sbjct: 355 VFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIEELIKEV 414
Query: 179 KFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 358
V +++ DD+ VA + L + + K D E E + A E K+ +
Sbjct: 415 MVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASE--TKAESKDANKQTEENKDSKAM 472
Query: 359 IDHNKSRPD 385
+ N S D
Sbjct: 473 ENKNDSSTD 481
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 2 LRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 112
L VF P W ++ H ++ NI+ +E+ DI
Sbjct: 548 LTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 275 PDLFEKSINEEEEHAKSLDESKKNFRKYI-DHNKSRPDIPSWFSI*SFINTN 427
PD + K++ E A+ + ES + KY+ D R D P F F +TN
Sbjct: 106 PDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTN 157
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.1 bits (57), Expect = 9.1
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Frame = +2
Query: 80 HCSMEMTKYDIKNYLE----KIYEVPVVD---VRTKINMGKFKKDVVKGYVIKEDDVKVA 238
H ++E K D K +E KI EVPVVD V K +D + + K +D++
Sbjct: 1186 HAAIEKEKEDAKLAIEQAPPKIVEVPVVDNAKVELLTRQNKELEDELVTFRTKAEDLEKR 1245
Query: 239 FVTLPKTMTFKYPDLFEK--SINEEEEHAKSLD 331
+ + K ++ EK +N+ +E + L+
Sbjct: 1246 LLEVQKESDELSREILEKDSKLNQLQEMIERLE 1278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,747,577
Number of Sequences: 37544
Number of extensions: 155605
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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