Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322G12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223...    28   4.0  
01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325     27   6.9  
03_02_0103 + 5640652-5641029,5641458-5641693,5642292-5642367,564...    27   9.1  
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058     27   9.1  

>07_03_0068 -
           13021090-13021197,13021319-13021354,13022245-13022322,
           13022412-13022514,13022732-13022817,13023036-13023090,
           13023186-13023250,13023997-13024086,13024415-13024530,
           13024701-13024710
          Length = 248

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 244 FNVSVCSSDFTTLQLATESQSNGHFHFIHIFMYITKLDII 363
           F++ +    F  LQL  ES SNG++  I    +I  L ++
Sbjct: 129 FHIQLLDHRFAHLQLCIESSSNGNWRSIWTLEFIDGLQLV 168


>01_05_0594 - 23506423-23506767,23507004-23507153,23507264-23508325
          Length = 518

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 314 CPFDWDSVASCKVVKSLLQTETLN*IVIFFF*EAYQLNCIFFL 186
           C   W+S+ SC+ +KS L+T ++      F  E Y++ C+ +L
Sbjct: 417 CADVWESLGSCECLKSHLKTVSIQ----GFHTERYEVLCLKYL 455


>03_02_0103 +
           5640652-5641029,5641458-5641693,5642292-5642367,
           5642450-5642526,5642672-5642702,5642798-5642950,
           5643259-5643300,5643372-5643440,5643645-5643752
          Length = 389

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 264 ATNRNVKLNCNFFLLRSLPTELYFFFIPD--SMFCLF 160
           ++NR ++L CN+    SL  + Y  F+P   +  CLF
Sbjct: 268 SSNRKLELMCNYLAELSLLDDYYIRFLPSIVAAACLF 304


>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
          Length = 365

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 431 RSRTLNDMFNTVRTLVPN 484
           R R +NDMF  +R LVPN
Sbjct: 99  RRRRMNDMFAGIRRLVPN 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,848
Number of Sequences: 37544
Number of extensions: 249222
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)