Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322G12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    30   0.87 
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    28   4.7  
Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 24/99 (24%), Positives = 42/99 (42%)
 Frame = -3

Query: 387 KRKKMLLYYNVKFGDVHKYMYEMKMSV*LGFCCKLQSGEIAATNRNVKLNCNFFLLRSLP 208
           ++ K L +   K  D+  + + + + V   +C        AA     KL C +F L  L 
Sbjct: 138 RKNKYLAFQLSKAVDIFTHTWSLSVEVQF-YCLVPFIFLFAAKLSGFKLQCAYFALIGLF 196

Query: 207 TELYFFFIPDSMFCLF*HAILFNFVIQWLAKCFVLH*RK 91
           +   F+FIP++M      A ++ F+I  +      H  K
Sbjct: 197 SYAIFYFIPENMSFNSVFARIWQFLIGMIVYILSSHSEK 235


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 321 MKMSV*LGFCCKLQSGEIAATNRNVKLNCNFFLLRSLPTEL 199
           +K  +     CK++ GE+  T   +K  C +F + S+  E+
Sbjct: 642 LKSGIEENITCKIKRGEMLNTYGLLKSKCRYFFINSMKEEI 682


>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 191 KKYNSVGKLLRRKKLQFNLTFLFVAAISPLCNLQQNPNQTDIF 319
           KKY++VG   RR+ L F +    VA ++ +  +  N +   +F
Sbjct: 189 KKYSTVGSFARRRALLFFILAATVAVLAVILTMLTNASVGPVF 231


>Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical
           protein C31E10.4 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +2

Query: 119 ASHCITKLKRIAC*NKQNMLSGIKKKYNS------VGKLLRRKKLQFNLTFLFVAAISPL 280
           A  CI  +  +AC +  +    IK+++++      +  + ++KK   N    F    SP 
Sbjct: 20  ARRCIQLVVGVACCSVPSATRKIKQRHDAMTMRRLISVIFQKKKRGLN----FGLYTSPA 75

Query: 281 CNLQQNPNQTDIFIS 325
             L  NPN  DIFI+
Sbjct: 76  IQLISNPNLKDIFIN 90


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 488 PNSARGFSLC*TYRSAFETLVDSRC 414
           PN+A G  +C T    + +L D RC
Sbjct: 156 PNNAGGLEICATVEITYVSLADQRC 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,627,341
Number of Sequences: 27780
Number of extensions: 277331
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)