Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.36 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 116 NVLFYISENIYLRRNWLFNLSTY 48
           ++L      I+LR +WLFNL+ Y
Sbjct: 218 DILHLRHTKIWLRPDWLFNLTKY 240


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 457 KHIVQRSRPWWIRGVM*TYLFLTK 386
           ++IV   RPWW R    +Y ++T+
Sbjct: 67  ENIVIDKRPWWERYQPISYKWITR 90


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 101 ISENIYLRRNWLFNLSTY 48
           +S NI LRR++  N +TY
Sbjct: 233 LSYNILLRRHYSMNSTTY 250


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 302 WDSVASCKVVKSLLQTETLN 243
           WD V  C +  SLL+   +N
Sbjct: 366 WDGVCMCFIYASLLEFVCVN 385


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 302 WDSVASCKVVKSLLQTETLN 243
           WD V  C +  SLL+   +N
Sbjct: 335 WDGVCMCFIYASLLEFVCVN 354


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 302 WDSVASCKVVKSLLQTETLN 243
           WD V  C +  SLL+   +N
Sbjct: 386 WDGVCMCFIYASLLEFVCVN 405


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 302 WDSVASCKVVKSLLQTETLN 243
           WD V  C +  SLL+   +N
Sbjct: 335 WDGVCMCFIYASLLEFVCVN 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,677
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)