Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    73   3e-14
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    66   4e-12
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    29   0.42 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   1.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   5.2  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   9.0  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 33/97 (34%), Positives = 49/97 (50%)
 Frame = +1

Query: 208 GLVAKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLAL 387
           G   K  +  R  +     K Y      E  L    + + V LP G D NEW+A +T+  
Sbjct: 3   GFSNKTAKTFRVRKTEAGTKHYQLRQYAEATLGSGSLMEAVKLPKGEDLNEWIAMNTMDF 62

Query: 388 FDHVNLVYGTVSEFCTAATCPDMTGPGGRSYAWYDER 498
           +  +N++YGT++EFCTAA+CP M       Y W D++
Sbjct: 63  YTQINMLYGTITEFCTAASCPQMNAGPSYEYYWQDDK 99


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = +1

Query: 238 REGEPAGDPK-LYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALFDHVNLVYG 414
           R G P+ +P  LYLQ+  +   L + +   +V LP  +D +EW+A +   LF ++N  Y 
Sbjct: 43  RTGSPSVEPTALYLQQPFVRTHLVKGNFSTIVSLPRFVDLDEWVALNVYELFTYLNHFYD 102

Query: 415 TVSEFCTAATCPDMTGPGGRSYAWYDERGK 504
             + FCT  TCP M+      Y W D   K
Sbjct: 103 VFATFCTVKTCPVMSAAANFDYTWLDNNRK 132


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = +1

Query: 193 VAFLGGLVAKARRKEREGEPAGDPKLYLQEALLERK---LPELDMRQL--VD--LPHGLD 351
           +A  GGLV   R    E  P G PK   QE L+  +   + ++D+ QL  +D  +P    
Sbjct: 92  IATKGGLV---RTGPNEWHPCGAPKFLRQEVLMSMRRLGVKQIDLWQLHRIDPKVPRKDQ 148

Query: 352 YNEWLASHTLALFDHVNLVYGTVSE 426
           ++E  A     L  HV L   TV +
Sbjct: 149 FSEIAAMKKEGLIRHVGLSEVTVDD 173


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 79  VHVMLRSGGMVGLSPPPHARLSLFDSCHRKIRLIGGGPVAF 201
           VH+ L++ G     PPPH  + L      +I    GG + F
Sbjct: 321 VHLKLKTPGGHASIPPPHTNIGLMSKLVTQIEEPFGGELTF 361


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 476  LRPPGPVMSGHVAAVQ---NSDTVPYTRFTWSNSASVCEAS 363
            L+ PG  MSG V+ +    + D +P T+FT +N   VC  S
Sbjct: 1070 LQLPGH-MSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLS 1109


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 110 TMPPERSITCTTRALVSGSVRPPSAVQRASQHANSS 3
           T P       TT+  +S SV  PS     +Q+AN+S
Sbjct: 224 TFPTAMKSQSTTKPTLSNSVSSPSIQVSNNQNANNS 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,040
Number of Sequences: 5004
Number of extensions: 27485
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)