Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical p...    33   0.094
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    31   0.38 
Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    29   1.5  
L16621-13|ABD63202.1|  141|Caenorhabditis elegans Hypothetical p...    29   2.0  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    28   3.5  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   3.5  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical
           protein C34C6.6b protein.
          Length = 500

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
 Frame = +2

Query: 218 LVGGDCGGNNALVQFSN--------IVRRDTGSLQHRSESDRYVQEFLSQNQN--IPQSF 367
           +V G CG  NALV  +N        +   +   L   S  ++   EFL Q      P SF
Sbjct: 4   VVEGQCGQQNALVGLANTFGTSNQRVAPSNASLLPSSSMGEQMANEFLRQQARTMAPTSF 63

Query: 368 NMNALLGNLPQ 400
           +M ++  NLPQ
Sbjct: 64  SMKSMQNNLPQ 74


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 147 IRTKVNARSMLTISKYQHRFLLSLLSPAIYVQLYLTLTSTICISL 13
           +RTK   R ML    YQH ++ + L  +IY  LY+  T  + +SL
Sbjct: 68  LRTKPGIREMLYT--YQHFYVAAALYNSIYYTLYIRCTGIVFLSL 110


>Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical
           protein C34C6.6a protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
 Frame = +2

Query: 218 LVGGDCGGNNALVQFSNIV----RRDTGS------LQHRSESDRYVQEFLSQNQN--IPQ 361
           +V G CG  NALV  +N      +R   S      L   S  ++   EFL Q      P 
Sbjct: 4   VVEGQCGQQNALVGLANTFGTSNQRVAPSNAAASLLPSSSMGEQMANEFLRQQARTMAPT 63

Query: 362 SFNMNALLGNLPQ 400
           SF+M ++  NLPQ
Sbjct: 64  SFSMKSMQNNLPQ 76


>AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical
           protein F23H11.4b protein.
          Length = 598

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 341 QNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVP 502
           Q+  IP+   +N  L +LP  + ++T     PSTS  S+ NC    ++S +  P
Sbjct: 97  QHPVIPERIQLNRPLPSLPI-DVSLTPVYSEPSTSSPSSTNCYENHNSSVVENP 149


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 341 QNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVP 502
           Q+  IP+   +N  L +LP  + ++T     PSTS  S+ NC    ++S +  P
Sbjct: 97  QHPVIPERIQLNRPLPSLPI-DVSLTPVYSEPSTSSPSSTNCYENHNSSVVENP 149


>L16621-13|ABD63202.1|  141|Caenorhabditis elegans Hypothetical
           protein ZK688.12 protein.
          Length = 141

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 228 PPTSLFKDIFYIPDYLFTMNDLSHVRSIRTKVNARSMLTISKYQHRFLLSL 76
           P TS+  ++ ++P  L   ND+ H      K +  + ++  K  +R ++ L
Sbjct: 73  PETSIEIELLHVPGILLPRNDVHHFSVYYIKCDTEAQVSFIKINYRVIIHL 123


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 306 DRCCKLPVSRRTMLENCTSALFPPQSPP 223
           DR C  P  +R + + C SA  P  SPP
Sbjct: 507 DRICVCPEGQRAVDQTCVSASEPVTSPP 534


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 306 DRCCKLPVSRRTMLENCTSALFPPQSPP 223
           DR C  P  +R + + C SA  P  SPP
Sbjct: 604 DRICVCPEGQRAVDQTCVSASEPVTSPP 631


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 202 FLYT*LFIYNE*LVTRT*YSYKGQCSINA 116
           FL    F+++E +  R+ YSY GQ  +NA
Sbjct: 6   FLLNFAFLFSEAIRCRSCYSYNGQACVNA 34


>Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.5 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 105 KYQHRFLLSLLSPAIYVQLYLTLTSTICIS 16
           K+Q  F+L LL P I V L ++     CIS
Sbjct: 238 KFQRAFILQLLIPFIIVFLPISYIGVTCIS 267


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 237 PQSPPTSLFKDIFYIPDYLFTMNDLSHVRSIRTKVN 130
           P +  TS+ ++ F +P Y+ T ++ S  R + +KVN
Sbjct: 746 PVADATSILQERFPMPRYIVTEHEGSQARFLLSKVN 781


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,677,460
Number of Sequences: 27780
Number of extensions: 256412
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)