Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322G02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.18
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 28 0.73
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 27 1.7
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 3.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 5.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 6.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 6.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 6.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 6.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 6.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 6.8
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 9.0
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.0
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLF-NKLERDPANHQQIEN-AIQSKINTVNANCEK 298
SY + N +T Q L T D N + RDP + I++ A+ K+NT+N + +K
Sbjct: 111 SYFNDAVKNNKTKALSIIQKLLSTVDSSTNSVSRDPFSVLSIDDSALTEKLNTINLDIDK 170
Query: 299 L 301
+
Sbjct: 171 I 171
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 128 YLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAI 259
Y + I+ + YH LQ T +L N L DP N + +A+
Sbjct: 686 YFEGTISTWGSQYHNVMTSLQRTINLLNMLTSDPKNTVYVFSAL 729
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 119 LKSYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPA-NHQQIENAIQSKINTVNANCE 295
+ YL+K + + H LQ +L + P + Q +E+ Q N VN+N +
Sbjct: 215 IADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQALESEAQRAFN-VNSNDQ 273
Query: 296 KLDIYV 313
+ IY+
Sbjct: 274 LMSIYI 279
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 248 ENAIQSKINTVNANCEKLDIYVFKTPINQRS 340
ENA +++IN NA C K+ ++ +P ++S
Sbjct: 303 ENANKTQINIENATCSKM-TWIMGSPTKEKS 332
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 134 KKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQI 247
KK ++ +ETL+ Q L++ F L P+N Q+
Sbjct: 522 KKNMSVLETLHSQQRDLMEIVLVAFKYLHLSPSNRLQL 559
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +2
Query: 185 LQETTDLFNKLERDPANHQQIENAIQSKINTVNANCEKLDIYVFKTPINQRSMAKMRVDQ 364
+++ L ++L NH+ EN + KIN + + + NQ ++ +
Sbjct: 44 VKDINALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSN--------NQAEESRNLISV 95
Query: 365 LKYDNKHIQASLINAQNK 418
L+ +N+ ++ +L N QNK
Sbjct: 96 LRNENESLKTNLEN-QNK 112
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 349 NESGPAEV**QTHTGFSYKCPKQKTKTGT 435
N + PAE QT +GFS+ P T T T
Sbjct: 357 NNTKPAEGANQTSSGFSFGKPATDTTTST 385
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 170 QTNQLLQETTDLFNKLERDPANHQQIENAIQSKINTVNANCEKLDIYVFKTP 325
++N+ +T ++N++ER A+ +A S IN N + TP
Sbjct: 602 RSNRTAAQTASVWNRIERAAAHDGPSLSAPSSSINLANITSRPTNSSAANTP 653
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKIN 274
+YL+K+I L H N LL++ + + P Q IEN Q ++
Sbjct: 650 NYLRKFIPKTSQLTHPLNNLLKKDV----RWKWTPTQTQAIENIKQCLVS 695
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 182 LLQETTDLFNKLERDPANHQQIEN 253
LL +DL ++E+DPA+ Q EN
Sbjct: 156 LLPVLSDLVKEMEKDPASLQAKEN 179
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +2
Query: 239 QQIENAIQSKINTVNANCEKLDIYV 313
QQ +N I++++ N +C+K+D ++
Sbjct: 459 QQHKNTIENQLAAANWDCQKIDEFM 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,154
Number of Sequences: 5004
Number of extensions: 40898
Number of successful extensions: 130
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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