Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322G02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 31 0.56
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 0.74
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 30 1.3
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 29 1.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 1.7
09_02_0181 - 5425833-5426527,5426667-5429397 29 3.0
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 27 6.9
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 27 6.9
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 27 6.9
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 27 6.9
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 27 9.1
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 27 9.1
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 27 9.1
>01_05_0801 + 25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +2
Query: 101 NDH*NYLKSYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANH--------QQIENA 256
N H L+ + T++E + Q QLLQ+ + K+++ H Q++ +
Sbjct: 847 NRHLQELEVTYNERTTSLEKMMGQREQLLQKYNEEIRKMQQLAQRHSQKIIDENQKLRSE 906
Query: 257 IQSKINTVNANCEKLDIYVFKTPINQR 337
++SK++ +N ++LD K+ ++R
Sbjct: 907 LESKMSELNTRSKELDEIAAKSDYDRR 933
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.7 bits (66), Expect = 0.74
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKINTVN-ANCEKL 301
S LKK + N+ + L+QE D N L +D N +++N IQS +T++ N EK
Sbjct: 390 SELKKEVENLTEQNRSSELLIQELRDEINSL-KDSKN--ELQNEIQSLRSTISQLNTEK- 445
Query: 302 DIYVFKTPINQRSMAKMRVDQLKYDNKHIQASLINAQNK 418
D +F+ +Q+S+ RV L+ +Q L + K
Sbjct: 446 DATLFQ---HQQSVE--RVSDLESQLLKLQPELEEIEQK 479
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 206 FNKLERDPANHQQIENAIQSKINTVNANCEKLDIYVFKTPINQRSMAKMR 355
FN D A+ Q +EN KI + A C++L V K ++AKMR
Sbjct: 300 FNLKSADAAHKQHLENV--KKITKLEAECQRLRSMVRKRLPGPAAIAKMR 347
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +2
Query: 203 LFNKLERDPANHQQIENAIQSKINTVNANCEKLDIYVFKTPINQRSMAKMRVDQLKYDNK 382
L N +E +P ++I I ++ N + + + +++R ++ R+D L Y+N+
Sbjct: 361 LKNDVEFEPLR-KKIPQIISRMDQIISKNIKMPSLCMTNDGLDERCISAKRIDSLYYENQ 419
Query: 383 HIQASL 400
H++ L
Sbjct: 420 HLRGLL 425
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 119 LKSYLKKYITNMETLYHQTN---QLLQETTDLFNKLERDPANHQQIENAIQSKINTVNAN 289
L+ +K + TL TN Q +E L ++ER ++EN NT+
Sbjct: 1285 LQDEAQKRMKGEATLLTMTNLHTQSQEEVNRLTPEIERLNRKLNEVENVSCELKNTILLL 1344
Query: 290 CEKLDIYVFKTPINQRSMAKMRVDQLKYDNKHIQASLINAQ 412
+ D T + Q A +RV L+ + +QA L+NA+
Sbjct: 1345 NSERD-----TTVLQHKQALVRVSDLESELSDVQAELVNAE 1380
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 YLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKINTVNAN-CEKLD 304
Y K N+E L T +L+ + D+ NK+ D + +I++ + + VN E+ D
Sbjct: 26 YPFKVTRNVENLEKATKKLIAKRDDVENKISNDERSGMRIKSEARRWLEDVNTTISEEAD 85
Query: 305 I 307
I
Sbjct: 86 I 86
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/101 (22%), Positives = 47/101 (46%)
Frame = +2
Query: 80 DYE*FNINDH*NYLKSYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAI 259
D E FN + +YLK +K Y + T Q ++ Q+ + N++ + + +++E A+
Sbjct: 452 DLEAFNRHHGKDYLKYEMKSYNEMVVTQLKQMSEDNQQLNYVKNEMVKTERHSKEVEEAL 511
Query: 260 QSKINTVNANCEKLDIYVFKTPINQRSMAKMRVDQLKYDNK 382
+ + E I KT + M V+Q++++ K
Sbjct: 512 GVETQKLQGAIEDNIILKRKT----KEMLSECVEQMEFNAK 548
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/83 (21%), Positives = 39/83 (46%)
Frame = +2
Query: 74 LRDYE*FNINDH*NYLKSYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIEN 253
LR+Y +I+ H + K+ +K + + + + + +E+TD + + N+ ++
Sbjct: 1241 LRNYFHVDISKHDKHTKTIVKSGVLSEDPDFKNSYLKKEESTDDASSKTEETTNNASLQK 1300
Query: 254 AIQSKINTVNANCEKLDIYVFKT 322
+ K N + N E D + KT
Sbjct: 1301 --EEKANDSSKNAENADNPIEKT 1321
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 474 KRRFKSCSLSANSCSRFCLLFWAFIREACMCLLSYF--SWSTLILAIDL 334
KRR + ++ +S S F ++ FI +C+ S+F SW ++ ++L
Sbjct: 65 KRRLGAGCVTCSSQSAFTIVLVIFITASCLISCSHFLMSWMSIEAVVEL 113
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 27.5 bits (58), Expect = 6.9
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 125 SYLKKYITNMETLYHQTNQLLQETTDLFNKLERDPANHQQIENAIQSKINTVN-ANCEKL 301
S LKK + ++ + L+QE D N L D N +++N IQS +T++ N EK
Sbjct: 610 SELKKEVESLTEQNRSSELLIQELRDEINSL-TDSRN--ELQNEIQSLRSTISQLNTEK- 665
Query: 302 DIYVFKTPINQRSMAKMRVDQLKYDNKHIQASLINAQNK 418
D +F+ +Q+S+ RV L+ +Q L + K
Sbjct: 666 DAALFQ---HQQSVE--RVSDLESQLLKLQPELEEIEQK 699
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 319 NTNKSKVYG*NESGPAEV**QTHTGFSYKCPKQKTKTGTRIS*KGTTFEP 468
NTN K+ N G V THT ++ Q KT R S KGT P
Sbjct: 183 NTNIGKLRS-NFLGTKFVIYDTHTPYNATSDSQSGKTSRRFSNKGTAKHP 231
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 221 RDPANHQQIENAIQSKINTVNANCEKLDIYVFKTPINQRSMAKMR 355
RDPA ++I I+S+ V D+ + TP + + ++R
Sbjct: 90 RDPARLREISGTIRSRHGRVQTKAVVFDLSLASTPDGDQPLRRLR 134
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 266 KINTVNANCEKLDIYVFKTPINQRSMAKMRVDQLKYDNKHIQ 391
+I +++ D FK P++Q ++ ++D+L D + +Q
Sbjct: 132 QIKKISSEIRPADFVPFKVPVDQSDLSLRKLDELTKDLESLQ 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,136
Number of Sequences: 37544
Number of extensions: 200923
Number of successful extensions: 367
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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